1 HisKA_3#1
199-266 aa · 68 aa · 16.8% of protein
Raw token
HisKA_3:199:1.02e-17:266:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVWC_RS05635
Histidine kinase, Classic
Bacillus mycoides · GCF_042883425
ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042883425#ACFVWC_RS05635Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 405 aa (38.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa405 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-395 aa · 87 aa · 21.5% of protein
Raw token
HATPase_c:309:0.00000000000000331:395:100:109- Raw architecture: HisKA_3:199:1.02e-17:266:68:68#HATPase_c:309:0.00000000000000331:395:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042883425::NZ_JBHVVQ010000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span247472-249323Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVWC_05635RefSeq proteinWP_390185600.1
Context group ID
GCF_042883425::NZ_JBHVVQ010000002.1::G00006Context members
ACFVWC_RS05635ACFVWC_RS05640
Partner locus tags
ACFVWC_RS05635ACFVWC_RS05640
Partner old locus tags
ACFVWC_05635ACFVWC_05640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390185600.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVWC_RS05635Primary locus identifier stored in the genes table.
Old locus tagACFVWC_05635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVVQ010000002.1Sequence record reported by the local genomic context database.
Genomic interval247 472-248 689 nt1 218 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span247 472-249 323 ntGCF_042883425::NZ_JBHVVQ010000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042883425::NZ_JBHVVQ010000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVVQ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span247 472-249 323 nt1 852 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
247 472 nt249 323 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFVWC_RS05635GCF_042883425#ACFVWC_RS05635
HKClassicCurrent focus
247 472-248 689 nt · Forward (+)
ACFVWC_RS05640GCF_042883425#ACFVWC_RS05640
RRNarL
248 679-249 323 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042883425#ACFVWC_RS05635The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2405282
Simplified PFAM architecture for HKOC_2405282
PFAM domain coverage: 157 / 405 aa (38.8%)
1 aa405 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[199-265] | HATPase_c[307-396]
- Domain count: 2
- Matched identifier: HKOC_2405282
- Positioned domains: HisKA_3 199-265 ; HATPase_c 307-396
Cluster members and taxonomy
Representative gene: GCF_042883425#ACFVWC_RS05635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042883425
AssemblyASM4288342v1 · Scaffoldhaploid
Genome composition5 980 078 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key