1 HisKA#1
121-172 aa · 52 aa · 15.3% of protein
Raw token
HisKA:121:0.00000139:172:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVVR_RS19790
Histidine kinase, Classic
Bacillus mycoides · GCF_042882555
ClassHKTypeClassicLength340 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042882555#ACFVVR_RS19790Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length340 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 340 aa (47.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa340 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-330 aa · 110 aa · 32.4% of protein
Raw token
HATPase_c:221:5.62e-22:330:110:109- Raw architecture: HisKA:121:0.00000139:172:58:64#HATPase_c:221:5.62e-22:330:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042882555::NZ_JBHVVY010000006.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span221601-223291Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVVR_19790RefSeq proteinWP_377941715.1
Context group ID
GCF_042882555::NZ_JBHVVY010000006.1::G00055Context members
ACFVVR_RS19790ACFVVR_RS19795
Partner locus tags
ACFVVR_RS19790ACFVVR_RS19795
Partner old locus tags
ACFVVR_19790ACFVVR_19795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_377941715.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVVR_RS19790Primary locus identifier stored in the genes table.
Old locus tagACFVVR_19790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVVY010000006.1Sequence record reported by the local genomic context database.
Genomic interval221 601-222 623 nt1 023 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span221 601-223 291 ntGCF_042882555::NZ_JBHVVY010000006.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042882555::NZ_JBHVVY010000006.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVVY010000006.1All displayed genes belong to this local TCS context.
Neighborhood span221 601-223 291 nt1 691 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
221 601 nt223 291 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFVVR_RS19790GCF_042882555#ACFVVR_RS19790
HKClassicCurrent focus
221 601-222 623 nt · Reverse (-)
ACFVVR_RS19795GCF_042882555#ACFVVR_RS19795
RROmpR
222 620-223 291 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042722135#ACFWML_RS28135Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2839194
Simplified PFAM architecture for HKOC_2839194
PFAM domain coverage: 111 / 340 aa (32.6%)
1 aa340 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-331]
- Domain count: 1
- Matched identifier: HKOC_2839194
- Positioned domains: HATPase_c 221-331
Cluster members and taxonomy
Representative gene: GCF_042722135#ACFWML_RS28135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042882555
AssemblyASM4288255v1 · Scaffoldhaploid
Genome composition5 857 668 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key