1 HAMP#1
59-127 aa · 69 aa · 19.2% of protein
Raw token
HAMP:59:0.0000000827:127:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVVR_RS15800
Histidine kinase, Classic
Bacillus mycoides · GCF_042882555
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042882555#ACFVVR_RS15800Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 360 aa (64.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation3 items
2 HisKA#2
139-202 aa · 64 aa · 17.8% of protein
Raw token
HisKA:139:0.00000000000000575:202:64:643 HATPase_c#3
251-349 aa · 99 aa · 27.5% of protein
Raw token
HATPase_c:251:5.34e-16:349:99:109- Raw architecture: HAMP:59:0.0000000827:127:69:69#HisKA:139:0.00000000000000575:202:64:64#HATPase_c:251:5.34e-16:349:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042882555::NZ_JBHVVY010000004.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span147442-149207Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVVR_15800RefSeq proteinWP_197219219.1
Context group ID
GCF_042882555::NZ_JBHVVY010000004.1::G00040Context members
ACFVVR_RS15800ACFVVR_RS15805
Partner locus tags
ACFVVR_RS15800ACFVVR_RS15805
Partner old locus tags
ACFVVR_15800ACFVVR_15805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_197219219.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVVR_RS15800Primary locus identifier stored in the genes table.
Old locus tagACFVVR_15800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVVY010000004.1Sequence record reported by the local genomic context database.
Genomic interval147 442-148 524 nt1 083 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span147 442-149 207 ntGCF_042882555::NZ_JBHVVY010000004.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042882555::NZ_JBHVVY010000004.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVVY010000004.1All displayed genes belong to this local TCS context.
Neighborhood span147 442-149 207 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
147 442 nt149 207 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFVVR_RS15800GCF_042882555#ACFVVR_RS15800
HKClassicCurrent focus
147 442-148 524 nt · Reverse (-)
ACFVVR_RS15805GCF_042882555#ACFVVR_RS15805
RROmpR
148 521-149 207 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015845055#ABE17_RS16870Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2749573
Simplified PFAM architecture for HKOC_2749573
PFAM domain coverage: 204 / 360 aa (56.7%)
1 aa360 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[84-126] | HisKA[139-202] | HATPase_c[252-348]
- Domain count: 3
- Matched identifier: HKOC_2749573
- Positioned domains: HAMP 84-126 ; HisKA 139-202 ; HATPase_c 252-348
Cluster members and taxonomy
Representative gene: GCF_015845055#ABE17_RS16870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042882555
AssemblyASM4288255v1 · Scaffoldhaploid
Genome composition5 857 668 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key