1 CheW#1
17-149 aa · 133 aa · 44.0% of protein
Raw token
CheW:17:4.43e-39:149:134:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVV6_RS08145
Response regulator CheV family
Bacillus mycoides · GCF_042882505
ClassRRTypeCheVLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042882505#ACFVV6_RS08145Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 302 aa (84.8%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 Response_reg#2
176-298 aa · 123 aa · 40.7% of protein
Raw token
Response_reg:176:7.89e-18:298:124:111- Raw architecture: CheW:17:4.43e-39:149:134:138#Response_reg:176:7.89e-18:298:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042882505::NZ_JBHVVX010000002.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span404333-405241Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVV6_08145RefSeq proteinWP_197218942.1
Context group ID
GCF_042882505::NZ_JBHVVX010000002.1::G00015Context members
ACFVV6_RS08145
Partner locus tags
ACFVV6_RS08145
Partner old locus tags
ACFVV6_08145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_197218942.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVV6_RS08145Primary locus identifier stored in the genes table.
Old locus tagACFVV6_08145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVVX010000002.1Sequence record reported by the local genomic context database.
Genomic interval404 333-405 241 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span404 333-405 241 ntGCF_042882505::NZ_JBHVVX010000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042882505::NZ_JBHVVX010000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVVX010000002.1All displayed genes belong to this local TCS context.
Neighborhood span404 333-405 241 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
404 333 nt405 241 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACFVV6_RS08145GCF_042882505#ACFVV6_RS08145
RRCheVCurrent focus
404 333-405 241 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015845055#ABE17_RS07370Use this link to inspect the representative gene detail.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0569297
Simplified PFAM architecture for RROC_0569297
PFAM domain coverage: 252 / 302 aa (83.4%)
1 aa302 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[18-149] | Response_reg[176-295]
- Domain count: 2
- Matched identifier: RROC_0569297
- Positioned domains: CheW 18-149 ; Response_reg 176-295
Cluster members and taxonomy
Representative gene: GCF_015845055#ABE17_RS07370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042882505
AssemblyASM4288250v1 · Scaffoldhaploid
Genome composition5 845 824 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key