1 Response_reg#1
9-119 aa · 111 aa · 45.7% of protein
Raw token
Response_reg:9:8.96e-37:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHNY_RS07790
Response regulator OmpR family
Bifidobacterium longum · GCF_042851965
ClassRRTypeOmpRLength243 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042851965#ACGHNY_RS07790Stable P2CS identifier used across views.
GenomeGCF_042851965Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 243 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-238 aa · 86 aa · 35.4% of protein
Raw token
Trans_reg_C:153:3.53e-29:238:86:77- Raw architecture: Response_reg:9:8.96e-37:119:111:111#Trans_reg_C:153:3.53e-29:238:86:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042851965::NZ_AP031422.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1808771-1811524Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI070019H7_15550RefSeq proteinWP_007053191.1
Context group ID
GCF_042851965::NZ_AP031422.1::G00011Context members
ACGHNY_RS07785ACGHNY_RS07790
Partner locus tags
ACGHNY_RS07785ACGHNY_RS07790
Partner old locus tags
I070019H7_15540I070019H7_15550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007053191.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3FKQ9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3FKQ9_BIFLLDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHNY_RS07790Primary locus identifier stored in the genes table.
Old locus tagI070019H7_15550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031422.1Sequence record reported by the local genomic context database.
Genomic interval1 810 793-1 811 524 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 808 771-1 811 524 ntGCF_042851965::NZ_AP031422.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042851965::NZ_AP031422.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031422.1All displayed genes belong to this local TCS context.
Neighborhood span1 808 771-1 811 524 nt2 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 808 771 nt1 811 524 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHNY_RS07785GCF_042851965#ACGHNY_RS07785
HKClassic
1 808 771-1 810 762 nt · Reverse (-)
ACGHNY_RS07790GCF_042851965#ACGHNY_RS07790
RROmpRCurrent focus
1 810 793-1 811 524 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS05565Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0824622
Simplified PFAM architecture for RROC_0824622
PFAM domain coverage: 196 / 243 aa (80.7%)
1 aa243 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-119] | Trans_reg_C[153-237]
- Domain count: 2
- Matched identifier: RROC_0824622
- Positioned domains: Response_reg 9-119 ; Response_reg 9-119 ; Trans_reg_C 153-237 ; Trans_reg_C 153-237
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS05565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_042851965
AssemblyASM4285196v1 · Complete Genomehaploid
Genome composition2 532 428 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key