1 GGDEF#1
136-276 aa · 141 aa · 32.5% of protein
Raw token
GGDEF:136:6.15e-40:276:153:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGG89_RS00355
Response regulator, PleD family
Anaerostipes hadrus · GCF_042845895
ClassRRTypePleDLength434 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042845895#ACGG89_RS00355Stable P2CS identifier used across views.
GenomeGCF_042845895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_reg
Protein length434 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage254 / 434 aa (58.5%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Response_reg#2
302-414 aa · 113 aa · 26.0% of protein
Raw token
Response_reg:302:3.48e-23:414:114:111- Raw architecture: GGDEF:136:6.15e-40:276:153:160#Response_reg:302:3.48e-23:414:114:111
- Domain description: 1 GGDEF,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042845895::NZ_BAABYN010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span63826-65130Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI2800192A2_00650RefSeq proteinWP_390135374.1
Context group ID
GCF_042845895::NZ_BAABYN010000001.1::G00001Context members
ACGG89_RS00355
Partner locus tags
ACGG89_RS00355
Partner old locus tags
I2800192A2_00650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390135374.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGG89_RS00355Primary locus identifier stored in the genes table.
Old locus tagI2800192A2_00650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BAABYN010000001.1Sequence record reported by the local genomic context database.
Genomic interval63 826-65 130 nt1 305 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 826-65 130 ntGCF_042845895::NZ_BAABYN010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042845895::NZ_BAABYN010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BAABYN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span63 826-65 130 nt1 305 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 826 nt65 130 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGG89_RS00355GCF_042845895#ACGG89_RS00355
RRPleDCurrent focus
63 826-65 130 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042845895#ACGG89_RS00355The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0341739
Simplified PFAM architecture for RROC_0341739
PFAM domain coverage: 257 / 434 aa (59.2%)
1 aa434 aa
GGDEFResponse_reg
- Simplified architecture: GGDEF + Response_reg
- Raw architecture: GGDEF[136-279] | Response_reg[302-414]
- Domain count: 2
- Matched identifier: RROC_0341739
- Positioned domains: GGDEF 136-279 ; Response_reg 302-414
Cluster members and taxonomy
Representative gene: GCF_042845895#ACGG89_RS00355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_042845895
AssemblyASM4284589v1 · Contighaploid
Genome composition3 562 690 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 66 · HK 32 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key