1 HisKA#1
85-152 aa · 68 aa · 21.9% of protein
Raw token
HisKA:85:0.0000000000000127:152:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFRCT_RS06725
Histidine kinase, Classic
Bacillus mycoides · GCF_042790895
ClassHKTypeClassicLength311 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042790895#ACFRCT_RS06725Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 311 aa (56.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa311 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
198-306 aa · 109 aa · 35.0% of protein
Raw token
HATPase_c:198:3.1e-25:306:109:109- Raw architecture: HisKA:85:0.0000000000000127:152:68:64#HATPase_c:198:3.1e-25:306:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042790895::NZ_JBHTYN010000004.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span286086-287715Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFRCT_06725RefSeq proteinWP_377952541.1
Context group ID
GCF_042790895::NZ_JBHTYN010000004.1::G00015Context members
ACFRCT_RS06725ACFRCT_RS06730
Partner locus tags
ACFRCT_RS06725ACFRCT_RS06730
Partner old locus tags
ACFRCT_06725ACFRCT_06730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_377952541.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFRCT_RS06725Primary locus identifier stored in the genes table.
Old locus tagACFRCT_06725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHTYN010000004.1Sequence record reported by the local genomic context database.
Genomic interval286 086-287 021 nt936 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span286 086-287 715 ntGCF_042790895::NZ_JBHTYN010000004.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042790895::NZ_JBHTYN010000004.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHTYN010000004.1All displayed genes belong to this local TCS context.
Neighborhood span286 086-287 715 nt1 630 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
286 086 nt287 715 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFRCT_RS06725GCF_042790895#ACFRCT_RS06725
HKClassicCurrent focus
286 086-287 021 nt · Reverse (-)
ACFRCT_RS06730GCF_042790895#ACFRCT_RS06730
RROmpR
287 023-287 715 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042790735#ACFRAW_RS09390Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2878445
Simplified PFAM architecture for HKOC_2878445
PFAM domain coverage: 173 / 311 aa (55.6%)
1 aa311 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-152] | HATPase_c[201-306]
- Domain count: 2
- Matched identifier: HKOC_2878445
- Positioned domains: HisKA 86-152 ; HATPase_c 201-306
Cluster members and taxonomy
Representative gene: GCF_042790735#ACFRAW_RS09390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042790895
AssemblyASM4279089v1 · Scaffoldhaploid
Genome composition5 914 938 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key