1 HisKA#1
176-233 aa · 58 aa · 15.1% of protein
Raw token
HisKA:176:0.00000000000222:233:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFWML_RS23355
Histidine kinase, Classic
Bacillus mycoides · GCF_042722135
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042722135#ACFWML_RS23355Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 385 aa (42.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
279-383 aa · 105 aa · 27.3% of protein
Raw token
HATPase_c:279:1.42e-25:383:108:109- Raw architecture: HisKA:176:0.00000000000222:233:58:64#HATPase_c:279:1.42e-25:383:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042722135::NZ_JBHXKL010000041.1::G00056
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3-1160Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFWML_23355RefSeq proteinWP_377945992.1
Context group ID
GCF_042722135::NZ_JBHXKL010000041.1::G00056Context members
ACFWML_RS23355
Partner locus tags
ACFWML_RS23355
Partner old locus tags
ACFWML_23355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_377945992.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFWML_RS23355Primary locus identifier stored in the genes table.
Old locus tagACFWML_23355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHXKL010000041.1Sequence record reported by the local genomic context database.
Genomic interval3-1 160 nt1 158 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3-1 160 ntGCF_042722135::NZ_JBHXKL010000041.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042722135::NZ_JBHXKL010000041.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHXKL010000041.1All displayed genes belong to this local TCS context.
Neighborhood span3-1 160 nt1 158 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 nt1 160 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACFWML_RS23355GCF_042722135#ACFWML_RS23355
HKClassicCurrent focus
3-1 160 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042722135#ACFWML_RS23355The current gene is the representative for this cluster.
PFAM architectureMASE12 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2571432
Simplified PFAM architecture for HKOC_2571432
PFAM domain coverage: 311 / 385 aa (80.8%)
1 aa385 aa
MASE12HisKAHATPase_c
- Simplified architecture: MASE12 + HisKA + HATPase_c
- Raw architecture: MASE12[2-149] | HisKA[177-233] | HATPase_c[279-384]
- Domain count: 3
- Matched identifier: HKOC_2571432
- Positioned domains: MASE12 2-149 ; HisKA 177-233 ; HATPase_c 279-384
Cluster members and taxonomy
Representative gene: GCF_042722135#ACFWML_RS23355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042722135
AssemblyASM4272213v1 · Scaffoldhaploid
Genome composition5 830 691 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key