1 HAMP#1
174-243 aa · 70 aa · 14.5% of protein
Raw token
HAMP:174:7.32e-17:243:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFWML_RS04185
Histidine kinase, Classic
Bacillus mycoides · GCF_042722135
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042722135#ACFWML_RS04185Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 484 aa (51.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
255-319 aa · 65 aa · 13.4% of protein
Raw token
HisKA:255:3.56e-16:319:65:643 HATPase_c#3
367-480 aa · 114 aa · 23.6% of protein
Raw token
HATPase_c:367:2.22e-30:480:114:109- Raw architecture: HAMP:174:7.32e-17:243:70:69#HisKA:255:3.56e-16:319:65:64#HATPase_c:367:2.22e-30:480:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042722135::NZ_JBHXKL010000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72443-74588Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFWML_04185RefSeq proteinWP_016120905.1
Context group ID
GCF_042722135::NZ_JBHXKL010000002.1::G00004Context members
ACFWML_RS04180ACFWML_RS04185
Partner locus tags
ACFWML_RS04180ACFWML_RS04185
Partner old locus tags
ACFWML_04180ACFWML_04185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016120905.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8H2M0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8H2M0_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFWML_RS04185Primary locus identifier stored in the genes table.
Old locus tagACFWML_04185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHXKL010000002.1Sequence record reported by the local genomic context database.
Genomic interval73 134-74 588 nt1 455 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 443-74 588 ntGCF_042722135::NZ_JBHXKL010000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042722135::NZ_JBHXKL010000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHXKL010000002.1All displayed genes belong to this local TCS context.
Neighborhood span72 443-74 588 nt2 146 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 443 nt74 588 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFWML_RS04180GCF_042722135#ACFWML_RS04180
RROmpR
72 443-73 132 nt · Reverse (-)
ACFWML_RS04185GCF_042722135#ACFWML_RS04185
HKClassicCurrent focus
73 134-74 588 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399425#IK1_RS22555Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1584444
Simplified PFAM architecture for HKOC_1584444
PFAM domain coverage: 227 / 484 aa (46.9%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-243] | HisKA[255-319] | HATPase_c[370-478]
- Domain count: 3
- Matched identifier: HKOC_1584444
- Positioned domains: HAMP 191-243 ; HisKA 255-319 ; HATPase_c 370-478
Cluster members and taxonomy
Representative gene: GCF_000399425#IK1_RS22555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042722135
AssemblyASM4272213v1 · Scaffoldhaploid
Genome composition5 830 691 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key