1 HisKA#1
240-305 aa · 66 aa · 14.3% of protein
Raw token
HisKA:240:0.00000000000000206:305:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACD401_RS07680
Histidine kinase, Classic
Clostridioides difficile · GCF_041537325
ClassHKTypeClassicLength460 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_041537325#ACD401_RS07680Stable P2CS identifier used across views.
GenomeGCF_041537325Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length460 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 460 aa (38.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa460 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
350-460 aa · 111 aa · 24.1% of protein
Raw token
HATPase_c:350:7.59e-22:460:111:109- Raw architecture: HisKA:240:0.00000000000000206:305:66:64#HATPase_c:350:7.59e-22:460:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_041537325::NZ_JBGOPD010000001.1::G00021
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1716680-1718062Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACD401_07680RefSeq proteinWP_200802023.1
Context group ID
GCF_041537325::NZ_JBGOPD010000001.1::G00021Context members
ACD401_RS07680
Partner locus tags
ACD401_RS07680
Partner old locus tags
ACD401_07680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_200802023.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACD401_RS07680Primary locus identifier stored in the genes table.
Old locus tagACD401_07680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBGOPD010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 716 680-1 718 062 nt1 383 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 716 680-1 718 062 ntGCF_041537325::NZ_JBGOPD010000001.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041537325::NZ_JBGOPD010000001.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGOPD010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 716 680-1 718 062 nt1 383 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 716 680 nt1 718 062 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACD401_RS07680GCF_041537325#ACD401_RS07680
HKClassicCurrent focus
1 716 680-1 718 062 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036698895#LFB25_RS18260Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1841952
Simplified PFAM architecture for HKOC_1841952
PFAM domain coverage: 177 / 460 aa (38.5%)
1 aa460 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[240-305] | HATPase_c[350-460]
- Domain count: 2
- Matched identifier: HKOC_1841952
- Positioned domains: HisKA 240-305 ; HATPase_c 350-460
Cluster members and taxonomy
Representative gene: GCF_036698895#LFB25_RS18260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_041537325
AssemblyASM4153732v1 · Contighaploid
Genome composition4 360 088 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key