1 Response_reg#1
5-91 aa · 87 aa · 95.6% of protein
Raw token
Response_reg:5:2.89e-17:91:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACD401_RS00610
Response regulator, CheY family
Clostridioides difficile · GCF_041537325
ClassRRTypeCheYLength91 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_041537325#ACD401_RS00610Stable P2CS identifier used across views.
GenomeGCF_041537325Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length91 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage87 / 91 aa (95.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa91 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:2.89e-17:91:88:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_041537325::NZ_JBGOPD010000001.1::G00004
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span126237-129730Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACD401_00610RefSeq proteinWP_372552187.1
Context group ID
GCF_041537325::NZ_JBGOPD010000001.1::G00004Context members
ACD401_RS00610ACD401_RS00620ACD401_RS00625
Partner locus tags
ACD401_RS00610ACD401_RS00620ACD401_RS00625
Partner old locus tags
ACD401_00610ACD401_00620ACD401_00625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_372552187.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACD401_RS00610Primary locus identifier stored in the genes table.
Old locus tagACD401_00610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBGOPD010000001.1Sequence record reported by the local genomic context database.
Genomic interval126 237-126 512 nt276 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span126 237-129 730 ntGCF_041537325::NZ_JBGOPD010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041537325::NZ_JBGOPD010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGOPD010000001.1All displayed genes belong to this local TCS context.
Neighborhood span126 237-129 730 nt3 494 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
126 237 nt129 730 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
ACD401_RS00610GCF_041537325#ACD401_RS00610
RRCheYCurrent focus
126 237-126 512 nt · Forward (+)
ACD401_RS00620GCF_041537325#ACD401_RS00620
HKClassic
126 985-129 000 nt · Forward (+)
ACD401_RS00625GCF_041537325#ACD401_RS00625
RROmpR
129 050-129 730 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276925#GSQ42_RS10155Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1216755
Simplified PFAM architecture for RROC_1216755
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[10-117] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1216755
- Positioned domains: Response_reg 10-117 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_012276925#GSQ42_RS10155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_041537325
AssemblyASM4153732v1 · Contighaploid
Genome composition4 360 088 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key