1 Response_reg#1
9-120 aa · 112 aa · 76.7% of protein
Raw token
Response_reg:9:1.12e-29:120:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACD265_RS10080
Response regulator, CheY family
Clostridioides difficile · GCF_041537305
ClassRRTypeCheYLength146 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_041537305#ACD265_RS10080Stable P2CS identifier used across views.
GenomeGCF_041537305Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length146 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 146 aa (76.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa146 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:1.12e-29:120:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_041537305::NZ_JBGOPC010000002.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span677032-677472Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACD265_10080RefSeq proteinWP_372551303.1
Context group ID
GCF_041537305::NZ_JBGOPC010000002.1::G00030Context members
ACD265_RS10080
Partner locus tags
ACD265_RS10080
Partner old locus tags
ACD265_10080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_372551303.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACD265_RS10080Primary locus identifier stored in the genes table.
Old locus tagACD265_10080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBGOPC010000002.1Sequence record reported by the local genomic context database.
Genomic interval677 032-677 472 nt441 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span677 032-677 472 ntGCF_041537305::NZ_JBGOPC010000002.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041537305::NZ_JBGOPC010000002.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGOPC010000002.1All displayed genes belong to this local TCS context.
Neighborhood span677 032-677 472 nt441 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
677 032 nt677 472 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACD265_RS10080GCF_041537305#ACD265_RS10080
RRCheYCurrent focus
677 032-677 472 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_041537305#ACD265_RS10080The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2246600
Simplified PFAM architecture for RROC_2246600
PFAM domain coverage: 112 / 146 aa (76.7%)
1 aa146 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[9-120]
- Domain count: 1
- Matched identifier: RROC_2246600
- Positioned domains: Response_reg 9-120
Cluster members and taxonomy
Representative gene: GCF_041537305#ACD265_RS10080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_041537305
AssemblyASM4153730v1 · Contighaploid
Genome composition4 255 016 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 45 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key