1 Response_reg#1
3-114 aa · 112 aa · 70.9% of protein
Raw token
Response_reg:3:6.05e-26:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACD328_RS07100
Response regulator, CheY family
Clostridioides difficile · GCF_041537245
ClassRRTypeCheYLength158 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041537245#ACD328_RS07100Stable P2CS identifier used across views.
GenomeGCF_041537245Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length158 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 158 aa (70.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa158 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:6.05e-26:114:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041537245::NZ_JBGOPB010000001.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1565199-1566634Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACD328_07100RefSeq proteinWP_372538186.1
Context group ID
GCF_041537245::NZ_JBGOPB010000001.1::G00029Context members
ACD328_RS07095ACD328_RS07100
Partner locus tags
ACD328_RS07095ACD328_RS07100
Partner old locus tags
ACD328_07095ACD328_07100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_372538186.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACD328_RS07100Primary locus identifier stored in the genes table.
Old locus tagACD328_07100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBGOPB010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 566 158-1 566 634 nt477 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 565 199-1 566 634 ntGCF_041537245::NZ_JBGOPB010000001.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041537245::NZ_JBGOPB010000001.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGOPB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 565 199-1 566 634 nt1 436 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 565 199 nt1 566 634 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACD328_RS07095GCF_041537245#ACD328_RS07095
HKClassic
1 565 199-1 566 158 nt · Forward (+)
ACD328_RS07100GCF_041537245#ACD328_RS07100
RRCheYCurrent focus
1 566 158-1 566 634 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_041537245#ACD328_RS07100The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2211623
Simplified PFAM architecture for RROC_2211623
PFAM domain coverage: 111 / 158 aa (70.3%)
1 aa158 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-113]
- Domain count: 1
- Matched identifier: RROC_2211623
- Positioned domains: Response_reg 3-113
Cluster members and taxonomy
Representative gene: GCF_041537245#ACD328_RS07100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_041537245
AssemblyASM4153724v1 · Contighaploid
Genome composition4 359 791 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key