1 Response_reg#1
5-112 aa · 108 aa · 52.7% of protein
Raw token
Response_reg:5:4.66e-25:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACD319_RS18080
Response regulator OmpR family
Clostridioides difficile · GCF_041537165
ClassRRTypeOmpRLength205 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_041537165#ACD319_RS18080Stable P2CS identifier used across views.
GenomeGCF_041537165Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length205 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 205 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa205 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-203 aa · 57 aa · 27.8% of protein
Raw token
Trans_reg_C:147:4.22e-20:203:57:77- Raw architecture: Response_reg:5:4.66e-25:112:109:111#Trans_reg_C:147:4.22e-20:203:57:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_041537165::NZ_JBGOOZ010000002.1::G00056
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span1761530-1765023Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACD319_18080RefSeq proteinWP_235671207.1
Context group ID
GCF_041537165::NZ_JBGOOZ010000002.1::G00056Context members
ACD319_RS18080ACD319_RS18085ACD319_RS18090
Partner locus tags
ACD319_RS18080ACD319_RS18085ACD319_RS18090
Partner old locus tags
ACD319_18080ACD319_18085ACD319_18090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235671207.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACD319_RS18080Primary locus identifier stored in the genes table.
Old locus tagACD319_18080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBGOOZ010000002.1Sequence record reported by the local genomic context database.
Genomic interval1 761 530-1 762 147 nt618 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 761 530-1 765 023 ntGCF_041537165::NZ_JBGOOZ010000002.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041537165::NZ_JBGOOZ010000002.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGOOZ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span1 761 530-1 765 023 nt3 494 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 761 530 nt1 765 023 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
ACD319_RS18080GCF_041537165#ACD319_RS18080
RROmpRCurrent focus
1 761 530-1 762 147 nt · Forward (+)
ACD319_RS18085GCF_041537165#ACD319_RS18085
HKClassic
1 762 278-1 764 293 nt · Forward (+)
ACD319_RS18090GCF_041537165#ACD319_RS18090
RROmpR
1 764 343-1 765 023 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003862895#EGL93_RS11010Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2092486
Simplified PFAM architecture for RROC_2092486
PFAM domain coverage: 165 / 205 aa (80.5%)
1 aa205 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[147-203]
- Domain count: 2
- Matched identifier: RROC_2092486
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 147-203 ; Trans_reg_C 147-203
Cluster members and taxonomy
Representative gene: GCF_003862895#EGL93_RS11010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_041537165
AssemblyASM4153716v1 · Contighaploid
Genome composition4 199 551 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key