1 HAMP#1
205-267 aa · 63 aa · 12.5% of protein
Raw token
HAMP:205:0.00000000503:267:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABR768_RS00395
Histidine kinase, Classic
Bacillus mycoides · GCF_041531495
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041531495#ABR768_RS00395Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 502 aa (47.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 HisKA#2
280-347 aa · 68 aa · 13.5% of protein
Raw token
HisKA:280:0.00000000000000748:347:68:643 HATPase_c#3
394-501 aa · 108 aa · 21.5% of protein
Raw token
HATPase_c:394:8.67e-23:501:109:109- Raw architecture: HAMP:205:0.00000000503:267:66:69#HisKA:280:0.00000000000000748:347:68:64#HATPase_c:394:8.67e-23:501:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041531495::NZ_JBEJVV010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58704-60897Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABR768_00395RefSeq proteinWP_002143536.1
Context group ID
GCF_041531495::NZ_JBEJVV010000001.1::G00003Context members
ABR768_RS00390ABR768_RS00395
Partner locus tags
ABR768_RS00390ABR768_RS00395
Partner old locus tags
ABR768_00390ABR768_00395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002143536.1Primary protein accession used for annex mappings.
UniProt accessionA0A653S3A7Primary UniProt accession resolved in the annex database.
UniProt IDA0A653S3A7_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABR768_RS00395Primary locus identifier stored in the genes table.
Old locus tagABR768_00395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBEJVV010000001.1Sequence record reported by the local genomic context database.
Genomic interval59 389-60 897 nt1 509 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 704-60 897 ntGCF_041531495::NZ_JBEJVV010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041531495::NZ_JBEJVV010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBEJVV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span58 704-60 897 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 704 nt60 897 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABR768_RS00390GCF_041531495#ABR768_RS00390
RROmpR
58 704-59 405 nt · Forward (+)
ABR768_RS00395GCF_041531495#ABR768_RS00395
HKClassicCurrent focus
59 389-60 897 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399145#IIC_RS24990Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1464081
Simplified PFAM architecture for HKOC_1464081
PFAM domain coverage: 217 / 502 aa (43.2%)
1 aa502 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-267] | HisKA[280-346] | HATPase_c[394-500]
- Domain count: 3
- Matched identifier: HKOC_1464081
- Positioned domains: HAMP 225-267 ; HisKA 280-346 ; HATPase_c 394-500
Cluster members and taxonomy
Representative gene: GCF_000399145#IIC_RS24990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_041531495
AssemblyASM4153149v1 · Contighaploid
Genome composition5 829 559 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 64 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key