1 HisKA#1
97-163 aa · 67 aa · 21.1% of protein
Raw token
HisKA:97:8.11e-18:163:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACDW39_RS05935
Histidine kinase, Classic
Clostridioides difficile · GCF_041520765
ClassHKTypeClassicLength317 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_041520765#ACDW39_RS05935Stable P2CS identifier used across views.
GenomeGCF_041520765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length317 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 317 aa (54.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa317 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
210-314 aa · 105 aa · 33.1% of protein
Raw token
HATPase_c:210:0.000000000547:314:110:109- Raw architecture: HisKA:97:8.11e-18:163:67:64#HATPase_c:210:0.000000000547:314:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_041520765::NZ_JBGOFS010000007.1::G00059
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span176917-177870Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACDW39_05935RefSeq proteinWP_372371696.1
Context group ID
GCF_041520765::NZ_JBGOFS010000007.1::G00059Context members
ACDW39_RS05935
Partner locus tags
ACDW39_RS05935
Partner old locus tags
ACDW39_05935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_372371696.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACDW39_RS05935Primary locus identifier stored in the genes table.
Old locus tagACDW39_05935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBGOFS010000007.1Sequence record reported by the local genomic context database.
Genomic interval176 917-177 870 nt954 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span176 917-177 870 ntGCF_041520765::NZ_JBGOFS010000007.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041520765::NZ_JBGOFS010000007.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGOFS010000007.1All displayed genes belong to this local TCS context.
Neighborhood span176 917-177 870 nt954 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 917 nt177 870 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACDW39_RS05935GCF_041520765#ACDW39_RS05935
HKClassicCurrent focus
176 917-177 870 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_041520765#ACDW39_RS05935The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2871993
Simplified PFAM architecture for HKOC_2871993
PFAM domain coverage: 172 / 317 aa (54.3%)
1 aa317 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[97-163] | HATPase_c[210-314]
- Domain count: 2
- Matched identifier: HKOC_2871993
- Positioned domains: HisKA 97-163 ; HATPase_c 210-314
Cluster members and taxonomy
Representative gene: GCF_041520765#ACDW39_RS05935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_041520765
AssemblyASM4152076v1 · Contighaploid
Genome composition4 353 333 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 45 · RR 53CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key