1 PAS#1
516-627 aa · 112 aa · 12.3% of protein
Raw token
PAS:516:0.0000377:627:114:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACDW39_RS00130
Histidine kinase, Classic
Clostridioides difficile · GCF_041520765
ClassHKTypeClassicLength907 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_041520765#ACDW39_RS00130Stable P2CS identifier used across views.
GenomeGCF_041520765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length907 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage295 / 907 aa (32.5%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa907 aa
Domain-by-domain annotation3 items
2 HisKA#2
650-721 aa · 72 aa · 7.9% of protein
Raw token
HisKA:650:0.00000000000000723:721:72:643 HATPase_c#3
768-878 aa · 111 aa · 12.2% of protein
Raw token
HATPase_c:768:3.07e-31:878:111:109- Raw architecture: PAS:516:0.0000377:627:114:113#HisKA:650:0.00000000000000723:721:72:64#HATPase_c:768:3.07e-31:878:111:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_041520765::NZ_JBGOFS010000001.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span32342-35065Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACDW39_00130RefSeq proteinWP_372371505.1
Context group ID
GCF_041520765::NZ_JBGOFS010000001.1::G00001Context members
ACDW39_RS00130
Partner locus tags
ACDW39_RS00130
Partner old locus tags
ACDW39_00130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_372371505.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACDW39_RS00130Primary locus identifier stored in the genes table.
Old locus tagACDW39_00130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBGOFS010000001.1Sequence record reported by the local genomic context database.
Genomic interval32 342-35 065 nt2 724 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span32 342-35 065 ntGCF_041520765::NZ_JBGOFS010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041520765::NZ_JBGOFS010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGOFS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span32 342-35 065 nt2 724 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 342 nt35 065 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACDW39_RS00130GCF_041520765#ACDW39_RS00130
HKClassicCurrent focus
32 342-35 065 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_041520765#ACDW39_RS00130The current gene is the representative for this cluster.
PFAM architecturePAS_8 + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0396849
Simplified PFAM architecture for HKOC_0396849
PFAM domain coverage: 340 / 907 aa (37.5%)
1 aa907 aa
PAS_8PAS_9HisKAHATPase_c
- Simplified architecture: PAS_8 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_8[298-350] | PAS_9[524-627] | HisKA[650-721] | HATPase_c[768-878]
- Domain count: 4
- Matched identifier: HKOC_0396849
- Positioned domains: PAS_8 298-350 ; PAS_9 524-627 ; HisKA 650-721 ; HATPase_c 768-878
Cluster members and taxonomy
Representative gene: GCF_041520765#ACDW39_RS00130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_041520765
AssemblyASM4152076v1 · Contighaploid
Genome composition4 353 333 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 45 · RR 53CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key