1 Response_reg#1
9-136 aa · 128 aa · 53.3% of protein
Raw token
Response_reg:9:1.53e-30:136:128:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ949_RS06160
Response regulator, unclassified
Bifidobacterium longum · GCF_041447135
ClassRRTypeunclassifiedLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041447135#SQ949_RS06160Stable P2CS identifier used across views.
GenomeGCF_041447135Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage128 / 240 aa (53.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:1.53e-30:136:128:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041447135::NZ_CP139453.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1427542-1430741Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041447135::NZ_CP139453.1::G00009Context members
SQ949_RS06155SQ949_RS06160
Partner locus tags
SQ949_RS06155SQ949_RS06160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_371813079.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ949_RS06160Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP139453.1Sequence record reported by the local genomic context database.
Genomic interval1 430 019-1 430 741 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 427 542-1 430 741 ntGCF_041447135::NZ_CP139453.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041447135::NZ_CP139453.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP139453.1All displayed genes belong to this local TCS context.
Neighborhood span1 427 542-1 430 741 nt3 200 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 427 542 nt1 430 741 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ949_RS06155GCF_041447135#SQ949_RS06155
HKClassic
1 427 542-1 429 935 nt · Forward (+)
SQ949_RS06160GCF_041447135#SQ949_RS06160
RRunclassifiedCurrent focus
1 430 019-1 430 741 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_041447135#SQ949_RS06160The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0901378
Simplified PFAM architecture for RROC_0901378
PFAM domain coverage: 127 / 240 aa (52.9%)
1 aa240 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[9-135]
- Domain count: 1
- Matched identifier: RROC_0901378
- Positioned domains: Response_reg 9-135
Cluster members and taxonomy
Representative gene: GCF_041447135#SQ949_RS06160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_041447135
Assembly2021J6-1 · Complete Genomehaploid
Genome composition2 482 090 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key