1 HAMP#1
267-335 aa · 69 aa · 10.3% of protein
Raw token
HAMP:267:0.0000000000000118:335:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ949_RS02675
Histidine kinase, Classic
Bifidobacterium longum · GCF_041447135
ClassHKTypeClassicLength667 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041447135#SQ949_RS02675Stable P2CS identifier used across views.
GenomeGCF_041447135Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length667 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage291 / 667 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
347-416 aa · 70 aa · 10.5% of protein
Raw token
HisKA:347:4.82e-18:416:70:643 HATPase_c#3
480-631 aa · 152 aa · 22.8% of protein
Raw token
HATPase_c:480:1.29e-20:631:152:109- Raw architecture: HAMP:267:0.0000000000000118:335:69:69#HisKA:347:4.82e-18:416:70:64#HATPase_c:480:1.29e-20:631:152:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041447135::NZ_CP139453.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span649630-652394Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041447135::NZ_CP139453.1::G00001Context members
SQ949_RS02670SQ949_RS02675
Partner locus tags
SQ949_RS02670SQ949_RS02675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_038425990.1Primary protein accession used for annex mappings.
UniProt accessionA0A7U4KEJ8Primary UniProt accession resolved in the annex database.
UniProt IDA0A7U4KEJ8_BIFLNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ949_RS02675Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP139453.1Sequence record reported by the local genomic context database.
Genomic interval650 391-652 394 nt2 004 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span649 630-652 394 ntGCF_041447135::NZ_CP139453.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041447135::NZ_CP139453.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP139453.1All displayed genes belong to this local TCS context.
Neighborhood span649 630-652 394 nt2 765 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
649 630 nt652 394 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ949_RS02670GCF_041447135#SQ949_RS02670
RROmpR
649 630-650 361 nt · Forward (+)
SQ949_RS02675GCF_041447135#SQ949_RS02675
HKClassicCurrent focus
650 391-652 394 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092325#BLJ_RS07440Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0853389
Simplified PFAM architecture for HKOC_0853389
PFAM domain coverage: 272 / 667 aa (40.8%)
1 aa667 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[284-335] | HisKA[348-416] | HATPase_c[480-630]
- Domain count: 3
- Matched identifier: HKOC_0853389
- Positioned domains: HAMP 284-335 ; HisKA 348-416 ; HATPase_c 480-630
Cluster members and taxonomy
Representative gene: GCF_000092325#BLJ_RS07440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_041447135
Assembly2021J6-1 · Complete Genomehaploid
Genome composition2 482 090 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key