1 HisKA#1
263-329 aa · 67 aa · 13.3% of protein
Raw token
HisKA:263:0.000000000000776:329:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ960_RS04915
Histidine kinase, Classic
Bifidobacterium longum · GCF_041447125
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041447125#SQ960_RS04915Stable P2CS identifier used across views.
GenomeGCF_041447125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 502 aa (35.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
392-502 aa · 111 aa · 22.1% of protein
Raw token
HATPase_c:392:0.0000000000000385:502:111:109- Raw architecture: HisKA:263:0.000000000000776:329:67:64#HATPase_c:392:0.0000000000000385:502:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041447125::NZ_CP139452.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1100946-1103125Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041447125::NZ_CP139452.1::G00009Context members
SQ960_RS04910SQ960_RS04915
Partner locus tags
SQ960_RS04910SQ960_RS04915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_050569349.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ960_RS04915Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP139452.1Sequence record reported by the local genomic context database.
Genomic interval1 101 617-1 103 125 nt1 509 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 100 946-1 103 125 ntGCF_041447125::NZ_CP139452.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041447125::NZ_CP139452.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP139452.1All displayed genes belong to this local TCS context.
Neighborhood span1 100 946-1 103 125 nt2 180 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 100 946 nt1 103 125 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ960_RS04910GCF_041447125#SQ960_RS04910
RROmpR
1 100 946-1 101 620 nt · Forward (+)
SQ960_RS04915GCF_041447125#SQ960_RS04915
HKClassicCurrent focus
1 101 617-1 103 125 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092325#BLJ_RS10345Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1463903
Simplified PFAM architecture for HKOC_1463903
PFAM domain coverage: 168 / 502 aa (33.5%)
1 aa502 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[264-329] | HATPase_c[393-494]
- Domain count: 2
- Matched identifier: HKOC_1463903
- Positioned domains: HisKA 264-329 ; HATPase_c 393-494
Cluster members and taxonomy
Representative gene: GCF_000092325#BLJ_RS10345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_041447125
Assembly2021S6-1 · Complete Genomehaploid
Genome composition2 482 096 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key