1 HAMP#1
44-114 aa · 71 aa · 20.6% of protein
Raw token
HAMP:44:8.8e-19:114:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ960_RS02980
Histidine kinase, Classic
Bifidobacterium longum · GCF_041447125
ClassHKTypeClassicLength344 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041447125#SQ960_RS02980Stable P2CS identifier used across views.
GenomeGCF_041447125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length344 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 344 aa (71.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa344 aa
Domain-by-domain annotation3 items
2 HisKA#2
118-182 aa · 65 aa · 18.9% of protein
Raw token
HisKA:118:1.22e-16:182:65:643 HATPase_c#3
227-337 aa · 111 aa · 32.3% of protein
Raw token
HATPase_c:227:7.74e-22:337:112:109- Raw architecture: HAMP:44:8.8e-19:114:71:69#HisKA:118:1.22e-16:182:65:64#HATPase_c:227:7.74e-22:337:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041447125::NZ_CP139452.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span689497-691291Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041447125::NZ_CP139452.1::G00003Context members
SQ960_RS02980SQ960_RS02985
Partner locus tags
SQ960_RS02980SQ960_RS02985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_013140508.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ960_RS02980Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP139452.1Sequence record reported by the local genomic context database.
Genomic interval689 497-690 531 nt1 035 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span689 497-691 291 ntGCF_041447125::NZ_CP139452.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041447125::NZ_CP139452.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP139452.1All displayed genes belong to this local TCS context.
Neighborhood span689 497-691 291 nt1 795 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
689 497 nt691 291 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ960_RS02980GCF_041447125#SQ960_RS02980
HKClassicCurrent focus
689 497-690 531 nt · Reverse (-)
SQ960_RS02985GCF_041447125#SQ960_RS02985
RROmpR
690 569-691 291 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092325#BLJ_RS03570Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2765053
Simplified PFAM architecture for HKOC_2765053
PFAM domain coverage: 231 / 357 aa (64.7%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2765053
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_000092325#BLJ_RS03570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_041447125
Assembly2021S6-1 · Complete Genomehaploid
Genome composition2 482 096 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key