1 HAMP#1
193-260 aa · 68 aa · 13.7% of protein
Raw token
HAMP:193:0.0000000000401:260:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACDE68_RS12085
Histidine kinase, Classic
[Ruminococcus] torques · GCF_041329195
ClassHKTypeClassicLength497 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041329195#ACDE68_RS12085Stable P2CS identifier used across views.
GenomeGCF_041329195Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length497 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 497 aa (48.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa497 aa
Domain-by-domain annotation3 items
2 HisKA#2
264-328 aa · 65 aa · 13.1% of protein
Raw token
HisKA:264:0.0000000000000364:328:65:643 HATPase_c#3
377-486 aa · 110 aa · 22.1% of protein
Raw token
HATPase_c:377:4.76e-31:486:110:109- Raw architecture: HAMP:193:0.0000000000401:260:68:69#HisKA:264:0.0000000000000364:328:65:64#HATPase_c:377:4.76e-31:486:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041329195::NZ_JBGKOT010000006.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1550124-1552260Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041329195::NZ_JBGKOT010000006.1::G00030Context members
ACDE68_RS12085ACDE68_RS12090
Partner locus tags
ACDE68_RS12085ACDE68_RS12090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004845612.1Primary protein accession used for annex mappings.
UniProt accessionA5KJN0Primary UniProt accession resolved in the annex database.
UniProt IDA5KJN0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACDE68_RS12085Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBGKOT010000006.1Sequence record reported by the local genomic context database.
Genomic interval1 550 124-1 551 617 nt1 494 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 550 124-1 552 260 ntGCF_041329195::NZ_JBGKOT010000006.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041329195::NZ_JBGKOT010000006.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGKOT010000006.1All displayed genes belong to this local TCS context.
Neighborhood span1 550 124-1 552 260 nt2 137 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 550 124 nt1 552 260 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACDE68_RS12085GCF_041329195#ACDE68_RS12085
HKClassicCurrent focus
1 550 124-1 551 617 nt · Reverse (-)
ACDE68_RS12090GCF_041329195#ACDE68_RS12090
RROmpR
1 551 574-1 552 260 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS03030Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1492876
Simplified PFAM architecture for HKOC_1492876
PFAM domain coverage: 227 / 497 aa (45.7%)
1 aa497 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[209-260] | HisKA[265-329] | HATPase_c[377-486]
- Domain count: 3
- Matched identifier: HKOC_1492876
- Positioned domains: HAMP 209-260 ; HisKA 265-329 ; HATPase_c 377-486
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS03030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_041329195
AssemblyASM4132919v1 · Contighaploid
Genome composition3 096 333 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 56 · HK 26 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key