1 Response_reg#1
3-115 aa · 113 aa · 47.5% of protein
Raw token
Response_reg:3:8.9e-18:115:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACDE68_RS06925
Response regulator LytTR family
[Ruminococcus] torques · GCF_041329195
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_041329195#ACDE68_RS06925Stable P2CS identifier used across views.
GenomeGCF_041329195Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 238 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-225 aa · 83 aa · 34.9% of protein
Raw token
LytTR:143:1.73e-21:225:88:98- Raw architecture: Response_reg:3:8.9e-18:115:116:111#LytTR:143:1.73e-21:225:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_041329195::NZ_JBGKOT010000006.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span481730-482446Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041329195::NZ_JBGKOT010000006.1::G00020Context members
ACDE68_RS06925
Partner locus tags
ACDE68_RS06925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009243413.1Primary protein accession used for annex mappings.
UniProt accessionA0A174CLB5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174CLB5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACDE68_RS06925Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBGKOT010000006.1Sequence record reported by the local genomic context database.
Genomic interval481 730-482 446 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span481 730-482 446 ntGCF_041329195::NZ_JBGKOT010000006.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041329195::NZ_JBGKOT010000006.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGKOT010000006.1All displayed genes belong to this local TCS context.
Neighborhood span481 730-482 446 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
481 730 nt482 446 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACDE68_RS06925GCF_041329195#ACDE68_RS06925
RRLytTRCurrent focus
481 730-482 446 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405315#AQ985_RS08450Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0936223
Simplified PFAM architecture for RROC_0936223
PFAM domain coverage: 196 / 238 aa (82.4%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-113] | LytTR[142-226]
- Domain count: 2
- Matched identifier: RROC_0936223
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; LytTR 142-226 ; LytTR 142-226
Cluster members and taxonomy
Representative gene: GCF_001405315#AQ985_RS08450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_041329195
AssemblyASM4132919v1 · Contighaploid
Genome composition3 096 333 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 56 · HK 26 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key