1 HisKA#1
139-206 aa · 68 aa · 18.5% of protein
Raw token
HisKA:139:0.000000000000136:206:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACDE68_RS05035
Histidine kinase, Classic
[Ruminococcus] torques · GCF_041329195
ClassHKTypeClassicLength367 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041329195#ACDE68_RS05035Stable P2CS identifier used across views.
GenomeGCF_041329195Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length367 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 367 aa (48.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa367 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
251-361 aa · 111 aa · 30.2% of protein
Raw token
HATPase_c:251:1.36e-26:361:112:109- Raw architecture: HisKA:139:0.000000000000136:206:68:64#HATPase_c:251:1.36e-26:361:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041329195::NZ_JBGKOT010000006.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70408-72211Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041329195::NZ_JBGKOT010000006.1::G00017Context members
ACDE68_RS05030ACDE68_RS05035
Partner locus tags
ACDE68_RS05030ACDE68_RS05035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004846890.1Primary protein accession used for annex mappings.
UniProt accessionA5KM00Primary UniProt accession resolved in the annex database.
UniProt IDA5KM00_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACDE68_RS05035Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBGKOT010000006.1Sequence record reported by the local genomic context database.
Genomic interval71 108-72 211 nt1 104 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 408-72 211 ntGCF_041329195::NZ_JBGKOT010000006.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041329195::NZ_JBGKOT010000006.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGKOT010000006.1All displayed genes belong to this local TCS context.
Neighborhood span70 408-72 211 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 408 nt72 211 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACDE68_RS05030GCF_041329195#ACDE68_RS05030
RROmpR
70 408-71 115 nt · Reverse (-)
ACDE68_RS05035GCF_041329195#ACDE68_RS05035
HKClassicCurrent focus
71 108-72 211 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS07920Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2705359
Simplified PFAM architecture for HKOC_2705359
PFAM domain coverage: 284 / 367 aa (77.4%)
1 aa367 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[19-126] | HisKA[139-205] | HATPase_c[252-360]
- Domain count: 3
- Matched identifier: HKOC_2705359
- Positioned domains: DUF4118 19-126 ; HisKA 139-205 ; HATPase_c 252-360
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS07920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_041329195
AssemblyASM4132919v1 · Contighaploid
Genome composition3 096 333 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 56 · HK 26 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key