1 Response_reg#1
4-107 aa · 104 aa · 21.3% of protein
Raw token
Response_reg:4:2.79e-26:107:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACDE68_RS04045
Response regulator, unclassified
[Ruminococcus] torques · GCF_041329195
ClassRRTypeunclassifiedLength489 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041329195#ACDE68_RS04045Stable P2CS identifier used across views.
GenomeGCF_041329195Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length489 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 489 aa (29.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa489 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
397-438 aa · 42 aa · 8.6% of protein
Raw token
HTH_AraC:397:0.00000011:438:42:42- Raw architecture: Response_reg:4:2.79e-26:107:104:111#HTH_AraC:397:0.00000011:438:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041329195::NZ_JBGKOT010000005.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67089-70407Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041329195::NZ_JBGKOT010000005.1::G00012Context members
ACDE68_RS04045ACDE68_RS04050
Partner locus tags
ACDE68_RS04045ACDE68_RS04050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_238095069.1Primary protein accession used for annex mappings.
UniProt accessionA0A174BFZ4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174BFZ4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACDE68_RS04045Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBGKOT010000005.1Sequence record reported by the local genomic context database.
Genomic interval67 089-68 558 nt1 470 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 089-70 407 ntGCF_041329195::NZ_JBGKOT010000005.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041329195::NZ_JBGKOT010000005.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGKOT010000005.1All displayed genes belong to this local TCS context.
Neighborhood span67 089-70 407 nt3 319 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 089 nt70 407 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACDE68_RS04045GCF_041329195#ACDE68_RS04045
RRunclassifiedCurrent focus
67 089-68 558 nt · Reverse (-)
ACDE68_RS04050GCF_041329195#ACDE68_RS04050
HKClassic
68 551-70 407 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405315#AQ985_RS06635Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0169668
Simplified PFAM architecture for RROC_0169668
PFAM domain coverage: 183 / 489 aa (37.4%)
1 aa489 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-108] | HTH_18[412-489]
- Domain count: 2
- Matched identifier: RROC_0169668
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; HTH_18 412-489 ; HTH_18 412-489
Cluster members and taxonomy
Representative gene: GCF_001405315#AQ985_RS06635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_041329195
AssemblyASM4132919v1 · Contighaploid
Genome composition3 096 333 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 56 · HK 26 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key