1 HAMP#1
91-169 aa · 79 aa · 19.8% of protein
Raw token
HAMP:91:0.000000491:169:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACDE68_RS03475
Histidine kinase, Classic
[Ruminococcus] torques · GCF_041329195
ClassHKTypeClassicLength400 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_041329195#ACDE68_RS03475Stable P2CS identifier used across views.
GenomeGCF_041329195Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length400 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 400 aa (63.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa400 aa
Domain-by-domain annotation3 items
2 HisKA#2
182-251 aa · 70 aa · 17.5% of protein
Raw token
HisKA:182:0.00000000238:251:70:643 HATPase_c#3
296-399 aa · 104 aa · 26.0% of protein
Raw token
HATPase_c:296:2.4e-21:399:106:109- Raw architecture: HAMP:91:0.000000491:169:79:69#HisKA:182:0.00000000238:251:70:64#HATPase_c:296:2.4e-21:399:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_041329195::NZ_JBGKOT010000004.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span151379-153249Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_041329195::NZ_JBGKOT010000004.1::G00009Context members
ACDE68_RS03475ACDE68_RS03480
Partner locus tags
ACDE68_RS03475ACDE68_RS03480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004848224.1Primary protein accession used for annex mappings.
UniProt accessionA5KPQ7Primary UniProt accession resolved in the annex database.
UniProt IDA5KPQ7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACDE68_RS03475Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBGKOT010000004.1Sequence record reported by the local genomic context database.
Genomic interval151 379-152 581 nt1 203 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span151 379-153 249 ntGCF_041329195::NZ_JBGKOT010000004.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_041329195::NZ_JBGKOT010000004.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBGKOT010000004.1All displayed genes belong to this local TCS context.
Neighborhood span151 379-153 249 nt1 871 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
151 379 nt153 249 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACDE68_RS03475GCF_041329195#ACDE68_RS03475
HKClassicCurrent focus
151 379-152 581 nt · Reverse (-)
ACDE68_RS03480GCF_041329195#ACDE68_RS03480
RROmpR
152 569-153 249 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS11750Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2440569
Simplified PFAM architecture for HKOC_2440569
PFAM domain coverage: 214 / 400 aa (53.5%)
1 aa400 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[127-169] | HisKA[183-250] | HATPase_c[297-399]
- Domain count: 3
- Matched identifier: HKOC_2440569
- Positioned domains: HAMP 127-169 ; HisKA 183-250 ; HATPase_c 297-399
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS11750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_041329195
AssemblyASM4132919v1 · Contighaploid
Genome composition3 096 333 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 56 · HK 26 · RR 29CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key