1 Response_reg#1
4-112 aa · 109 aa · 49.5% of protein
Raw token
Response_reg:4:2.84e-31:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5800_RS01340
Response regulator OmpR family
Bifidobacterium catenulatum · GCF_040927305
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040927305#AB5800_RS01340Stable P2CS identifier used across views.
GenomeGCF_040927305Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 220 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:144:3.85e-27:218:77:77- Raw architecture: Response_reg:4:2.84e-31:112:111:111#Trans_reg_C:144:3.85e-27:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040927305::NZ_JBCOGK010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span244306-246383Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040927305::NZ_JBCOGK010000001.1::G00005Context members
AB5800_RS01340AB5800_RS01345
Partner locus tags
AB5800_RS01340AB5800_RS01345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117800819.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5800_RS01340Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOGK010000001.1Sequence record reported by the local genomic context database.
Genomic interval244 306-244 968 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span244 306-246 383 ntGCF_040927305::NZ_JBCOGK010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040927305::NZ_JBCOGK010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOGK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span244 306-246 383 nt2 078 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
244 306 nt246 383 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5800_RS01340GCF_040927305#AB5800_RS01340
RROmpRCurrent focus
244 306-244 968 nt · Forward (+)
AB5800_RS01345GCF_040927305#AB5800_RS01345
HKClassic
244 995-246 383 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468085#DW899_RS09450Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1732452
Simplified PFAM architecture for RROC_1732452
PFAM domain coverage: 182 / 220 aa (82.7%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[144-217]
- Domain count: 2
- Matched identifier: RROC_1732452
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 144-217 ; Trans_reg_C 144-217
Cluster members and taxonomy
Representative gene: GCF_003468085#DW899_RS09450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_040927305
AssemblyASM4092730v1 · Scaffoldhaploid
Genome composition2 126 939 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 25 · HK 11 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key