1 HisKA#1
661-727 aa · 67 aa · 7.6% of protein
Raw token
HisKA:661:0.00000000000000937:727:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5805_RS01465
Histidine kinase, Classic
Blautia wexlerae · GCF_040926725
ClassHKTypeClassicLength885 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926725#AB5805_RS01465Stable P2CS identifier used across views.
GenomeGCF_040926725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length885 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 885 aa (18.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
773-865 aa · 93 aa · 10.5% of protein
Raw token
HATPase_c:773:0.000000000178:865:97:109- Raw architecture: HisKA:661:0.00000000000000937:727:67:64#HATPase_c:773:0.000000000178:865:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926725::NZ_JBCOHO010000003.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span86106-89657Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926725::NZ_JBCOHO010000003.1::G00005Context members
AB5805_RS01465AB5805_RS01470
Partner locus tags
AB5805_RS01465AB5805_RS01470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368208112.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5805_RS01465Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHO010000003.1Sequence record reported by the local genomic context database.
Genomic interval86 106-88 763 nt2 658 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span86 106-89 657 ntGCF_040926725::NZ_JBCOHO010000003.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926725::NZ_JBCOHO010000003.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHO010000003.1All displayed genes belong to this local TCS context.
Neighborhood span86 106-89 657 nt3 552 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 106 nt89 657 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5805_RS01465GCF_040926725#AB5805_RS01465
HKClassicCurrent focus
86 106-88 763 nt · Reverse (-)
AB5805_RS01470GCF_040926725#AB5805_RS01470
RROmpR
88 962-89 657 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040926645#AB5791_RS00415Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0437956
Simplified PFAM architecture for HKOC_0437956
PFAM domain coverage: 157 / 885 aa (17.7%)
1 aa885 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[662-726] | HATPase_c[774-865]
- Domain count: 2
- Matched identifier: HKOC_0437956
- Positioned domains: HisKA 662-726 ; HATPase_c 774-865
Cluster members and taxonomy
Representative gene: GCF_040926645#AB5791_RS00415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926725
AssemblyASM4092672v1 · Scaffoldhaploid
Genome composition4 195 638 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 60 · RR 63CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key