1 Response_reg#1
3-109 aa · 107 aa · 20.2% of protein
Raw token
Response_reg:3:5.74e-29:109:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5801_RS09350
Response regulator, unclassified
Blautia wexlerae · GCF_040926705
ClassRRTypeunclassifiedLength529 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040926705#AB5801_RS09350Stable P2CS identifier used across views.
GenomeGCF_040926705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length529 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage107 / 529 aa (20.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa529 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:5.74e-29:109:107:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040926705::NZ_JBCOHP010000066.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span624-2213Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926705::NZ_JBCOHP010000066.1::G00031Context members
AB5801_RS09350
Partner locus tags
AB5801_RS09350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173697309.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5801_RS09350Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHP010000066.1Sequence record reported by the local genomic context database.
Genomic interval624-2 213 nt1 590 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span624-2 213 ntGCF_040926705::NZ_JBCOHP010000066.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926705::NZ_JBCOHP010000066.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHP010000066.1All displayed genes belong to this local TCS context.
Neighborhood span624-2 213 nt1 590 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
624 nt2 213 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5801_RS09350GCF_040926705#AB5801_RS09350
RRunclassifiedCurrent focus
624-2 213 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301885#G4888_RS12805Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0113455
Simplified PFAM architecture for RROC_0113455
PFAM domain coverage: 188 / 529 aa (35.5%)
1 aa529 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-113] | HTH_18[447-523]
- Domain count: 2
- Matched identifier: RROC_0113455
- Positioned domains: Response_reg 3-113 ; HTH_18 447-523
Cluster members and taxonomy
Representative gene: GCF_013301885#G4888_RS12805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926705
AssemblyASM4092670v1 · Scaffoldhaploid
Genome composition4 067 307 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 120 · HK 53 · RR 60CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key