1 sCache_like#1
43-132 aa · 90 aa · 20.0% of protein
Raw token
sCache_like:43:0.000000000091:132:97:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5801_RS08430
Histidine kinase, Classic
Blautia wexlerae · GCF_040926705
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926705#AB5801_RS08430Stable P2CS identifier used across views.
GenomeGCF_040926705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage269 / 450 aa (59.8%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation3 items
2 HisKA#2
225-290 aa · 66 aa · 14.7% of protein
Raw token
HisKA:225:4.26e-17:290:66:643 HATPase_c#3
335-447 aa · 113 aa · 25.1% of protein
Raw token
HATPase_c:335:7.76e-28:447:113:109- Raw architecture: sCache_like:43:0.000000000091:132:97:114#HisKA:225:4.26e-17:290:66:64#HATPase_c:335:7.76e-28:447:113:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926705::NZ_JBCOHP010000054.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12175-14228Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926705::NZ_JBCOHP010000054.1::G00025Context members
AB5801_RS08425AB5801_RS08430
Partner locus tags
AB5801_RS08425AB5801_RS08430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227311346.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5801_RS08430Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHP010000054.1Sequence record reported by the local genomic context database.
Genomic interval12 876-14 228 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 175-14 228 ntGCF_040926705::NZ_JBCOHP010000054.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926705::NZ_JBCOHP010000054.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHP010000054.1All displayed genes belong to this local TCS context.
Neighborhood span12 175-14 228 nt2 054 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 175 nt14 228 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5801_RS08425GCF_040926705#AB5801_RS08425
RROmpR
12 175-12 843 nt · Forward (+)
AB5801_RS08430GCF_040926705#AB5801_RS08430
HKClassicCurrent focus
12 876-14 228 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020593505#LJE09_RS11300Use this link to inspect the representative gene detail.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1967629
Simplified PFAM architecture for HKOC_1967629
PFAM domain coverage: 246 / 450 aa (54.7%)
1 aa450 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[61-132] | HisKA[225-290] | HATPase_c[338-445]
- Domain count: 3
- Matched identifier: HKOC_1967629
- Positioned domains: sCache_like 61-132 ; HisKA 225-290 ; HATPase_c 338-445
Cluster members and taxonomy
Representative gene: GCF_020593505#LJE09_RS11300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926705
AssemblyASM4092670v1 · Scaffoldhaploid
Genome composition4 067 307 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 120 · HK 53 · RR 60CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key