1 PAS_3#1
360-426 aa · 67 aa · 6.8% of protein
Raw token
PAS_3:360:0.00000226:426:71:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5801_RS07175
Histidine kinase, Hybrid
Blautia wexlerae · GCF_040926705
ClassHKTypeHybridLength984 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040926705#AB5801_RS07175Stable P2CS identifier used across views.
GenomeGCF_040926705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length984 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage484 / 984 aa (49.2%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa984 aa
Domain-by-domain annotation5 items
2 HisKA#2
470-536 aa · 67 aa · 6.8% of protein
Raw token
HisKA:470:8.96e-20:536:67:643 HATPase_c#3
584-701 aa · 118 aa · 12.0% of protein
Raw token
HATPase_c:584:1.35e-31:701:118:1094 Response_reg#4
720-833 aa · 114 aa · 11.6% of protein
Raw token
Response_reg:720:2.79e-19:833:114:1115 Response_reg#5
861-978 aa · 118 aa · 12.0% of protein
Raw token
Response_reg:861:1.54e-32:978:118:111- Raw architecture: PAS_3:360:0.00000226:426:71:89#HisKA:470:8.96e-20:536:67:64#HATPase_c:584:1.35e-31:701:118:109#Response_reg:720:2.79e-19:833:114:111#Response_reg:861:1.54e-32:978:118:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040926705::NZ_JBCOHP010000042.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span16041-18995Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926705::NZ_JBCOHP010000042.1::G00020Context members
AB5801_RS07175
Partner locus tags
AB5801_RS07175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368208624.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5801_RS07175Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHP010000042.1Sequence record reported by the local genomic context database.
Genomic interval16 041-18 995 nt2 955 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 041-18 995 ntGCF_040926705::NZ_JBCOHP010000042.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926705::NZ_JBCOHP010000042.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHP010000042.1All displayed genes belong to this local TCS context.
Neighborhood span16 041-18 995 nt2 955 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 041 nt18 995 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5801_RS07175GCF_040926705#AB5801_RS07175
HKHybridCurrent focus
16 041-18 995 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040916065#AB5271_RS07575Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0303494
Simplified PFAM architecture for HKOC_0303494
PFAM domain coverage: 414 / 984 aa (42.1%)
1 aa984 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[470-536] | HATPase_c[584-700] | Response_reg[720-832] | Response_reg[861-977]
- Domain count: 4
- Matched identifier: HKOC_0303494
- Positioned domains: HisKA 470-536 ; HATPase_c 584-700 ; Response_reg 720-832 ; Response_reg 861-977
Cluster members and taxonomy
Representative gene: GCF_040916065#AB5271_RS07575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926705
AssemblyASM4092670v1 · Scaffoldhaploid
Genome composition4 067 307 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 120 · HK 53 · RR 60CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key