1 HisKA#1
127-188 aa · 62 aa · 18.0% of protein
Raw token
HisKA:127:0.000000000821:188:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5801_RS02885
Histidine kinase, Classic
Blautia wexlerae · GCF_040926705
ClassHKTypeClassicLength345 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926705#AB5801_RS02885Stable P2CS identifier used across views.
GenomeGCF_040926705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length345 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 345 aa (49.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa345 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
234-343 aa · 110 aa · 31.9% of protein
Raw token
HATPase_c:234:1.73e-29:343:110:109- Raw architecture: HisKA:127:0.000000000821:188:62:64#HATPase_c:234:1.73e-29:343:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926705::NZ_JBCOHP010000012.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23555-25287Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926705::NZ_JBCOHP010000012.1::G00010Context members
AB5801_RS02880AB5801_RS02885
Partner locus tags
AB5801_RS02880AB5801_RS02885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055153205.1Primary protein accession used for annex mappings.
UniProt accessionA0A174G3U1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174G3U1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5801_RS02885Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHP010000012.1Sequence record reported by the local genomic context database.
Genomic interval24 250-25 287 nt1 038 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 555-25 287 ntGCF_040926705::NZ_JBCOHP010000012.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926705::NZ_JBCOHP010000012.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHP010000012.1All displayed genes belong to this local TCS context.
Neighborhood span23 555-25 287 nt1 733 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 555 nt25 287 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5801_RS02880GCF_040926705#AB5801_RS02880
RROmpR
23 555-24 241 nt · Forward (+)
AB5801_RS02885GCF_040926705#AB5801_RS02885
HKClassicCurrent focus
24 250-25 287 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS17385Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2819426
Simplified PFAM architecture for HKOC_2819426
PFAM domain coverage: 173 / 345 aa (50.1%)
1 aa345 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[125-188] | HATPase_c[234-342]
- Domain count: 2
- Matched identifier: HKOC_2819426
- Positioned domains: HisKA 125-188 ; HATPase_c 234-342
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS17385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926705
AssemblyASM4092670v1 · Scaffoldhaploid
Genome composition4 067 307 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 120 · HK 53 · RR 60CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key