1 HisKA#1
294-361 aa · 68 aa · 13.1% of protein
Raw token
HisKA:294:0.0000000000101:361:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5801_RS02285
Histidine kinase, Classic
Blautia wexlerae · GCF_040926705
ClassHKTypeClassicLength521 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926705#AB5801_RS02285Stable P2CS identifier used across views.
GenomeGCF_040926705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length521 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 521 aa (34.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa521 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
404-516 aa · 113 aa · 21.7% of protein
Raw token
HATPase_c:404:3.42e-31:516:113:109- Raw architecture: HisKA:294:0.0000000000101:361:68:64#HATPase_c:404:3.42e-31:516:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926705::NZ_JBCOHP010000009.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16229-18491Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926705::NZ_JBCOHP010000009.1::G00007Context members
AB5801_RS02285AB5801_RS02290
Partner locus tags
AB5801_RS02285AB5801_RS02290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055053412.1Primary protein accession used for annex mappings.
UniProt accessionA0A174E1T2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174E1T2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5801_RS02285Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHP010000009.1Sequence record reported by the local genomic context database.
Genomic interval16 229-17 794 nt1 566 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 229-18 491 ntGCF_040926705::NZ_JBCOHP010000009.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926705::NZ_JBCOHP010000009.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHP010000009.1All displayed genes belong to this local TCS context.
Neighborhood span16 229-18 491 nt2 263 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 229 nt18 491 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5801_RS02285GCF_040926705#AB5801_RS02285
HKClassicCurrent focus
16 229-17 794 nt · Forward (+)
AB5801_RS02290GCF_040926705#AB5801_RS02290
RROmpR
17 787-18 491 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS08810Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1387880
Simplified PFAM architecture for HKOC_1387880
PFAM domain coverage: 286 / 521 aa (54.9%)
1 aa521 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[25-131] | HisKA[294-361] | HATPase_c[405-515]
- Domain count: 3
- Matched identifier: HKOC_1387880
- Positioned domains: DUF4118 25-131 ; HisKA 294-361 ; HATPase_c 405-515
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS08810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926705
AssemblyASM4092670v1 · Scaffoldhaploid
Genome composition4 067 307 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 120 · HK 53 · RR 60CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key