1 Response_reg#1
4-106 aa · 103 aa · 45.0% of protein
Raw token
Response_reg:4:1.95e-31:106:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5801_RS01545
Response regulator OmpR family
Blautia wexlerae · GCF_040926705
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926705#AB5801_RS01545Stable P2CS identifier used across views.
GenomeGCF_040926705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 229 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:148:8.22e-25:223:78:77- Raw architecture: Response_reg:4:1.95e-31:106:103:111#Trans_reg_C:148:8.22e-25:223:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926705::NZ_JBCOHP010000006.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5320-7034Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926705::NZ_JBCOHP010000006.1::G00004Context members
AB5801_RS01540AB5801_RS01545
Partner locus tags
AB5801_RS01540AB5801_RS01545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161276009.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8XRQ0Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8XRQ0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5801_RS01545Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHP010000006.1Sequence record reported by the local genomic context database.
Genomic interval6 345-7 034 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 320-7 034 ntGCF_040926705::NZ_JBCOHP010000006.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926705::NZ_JBCOHP010000006.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHP010000006.1All displayed genes belong to this local TCS context.
Neighborhood span5 320-7 034 nt1 715 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 320 nt7 034 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5801_RS01540GCF_040926705#AB5801_RS01540
HKClassic
5 320-6 348 nt · Reverse (-)
AB5801_RS01545GCF_040926705#AB5801_RS01545
RROmpRCurrent focus
6 345-7 034 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009881235#GT685_RS06165Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1266551
Simplified PFAM architecture for RROC_1266551
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1266551
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_009881235#GT685_RS06165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926705
AssemblyASM4092670v1 · Scaffoldhaploid
Genome composition4 067 307 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 120 · HK 53 · RR 60CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key