1 Response_reg#1
5-117 aa · 113 aa · 59.2% of protein
Raw token
Response_reg:5:4.99e-30:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5801_RS00390
Response regulator, unclassified
Blautia wexlerae · GCF_040926705
ClassRRTypeunclassifiedLength191 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040926705#AB5801_RS00390Stable P2CS identifier used across views.
GenomeGCF_040926705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length191 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 191 aa (59.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa191 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:4.99e-30:117:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040926705::NZ_JBCOHP010000002.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16235-18642Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040926705::NZ_JBCOHP010000002.1::G00001Context members
AB5801_RS00390AB5801_RS00395
Partner locus tags
AB5801_RS00390AB5801_RS00395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368208244.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5801_RS00390Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOHP010000002.1Sequence record reported by the local genomic context database.
Genomic interval16 235-16 810 nt576 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 235-18 642 ntGCF_040926705::NZ_JBCOHP010000002.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040926705::NZ_JBCOHP010000002.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOHP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span16 235-18 642 nt2 408 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 235 nt18 642 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5801_RS00390GCF_040926705#AB5801_RS00390
RRunclassifiedCurrent focus
16 235-16 810 nt · Reverse (-)
AB5801_RS00395GCF_040926705#AB5801_RS00395
HKClassic
16 810-18 642 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040926645#AB5791_RS04315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2169853
Simplified PFAM architecture for RROC_2169853
PFAM domain coverage: 111 / 191 aa (58.1%)
1 aa191 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-115]
- Domain count: 1
- Matched identifier: RROC_2169853
- Positioned domains: Response_reg 5-115
Cluster members and taxonomy
Representative gene: GCF_040926645#AB5791_RS04315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040926705
AssemblyASM4092670v1 · Scaffoldhaploid
Genome composition4 067 307 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 120 · HK 53 · RR 60CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key