1 HAMP#1
211-275 aa · 65 aa · 11.6% of protein
Raw token
HAMP:211:0.0000000000000402:275:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5512_RS01775
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_040921805
ClassHKTypeClassicLength560 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040921805#AB5512_RS01775Stable P2CS identifier used across views.
GenomeGCF_040921805Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length560 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 560 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa560 aa
Domain-by-domain annotation3 items
2 HisKA#2
286-353 aa · 68 aa · 12.1% of protein
Raw token
HisKA:286:0.00000000000000161:353:68:643 HATPase_c#3
400-510 aa · 111 aa · 19.8% of protein
Raw token
HATPase_c:400:6.13e-32:510:111:109- Raw architecture: HAMP:211:0.0000000000000402:275:67:69#HisKA:286:0.00000000000000161:353:68:64#HATPase_c:400:6.13e-32:510:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040921805::NZ_JBCORC010000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span148056-150482Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040921805::NZ_JBCORC010000002.1::G00004Context members
AB5512_RS01775AB5512_RS01780
Partner locus tags
AB5512_RS01775AB5512_RS01780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_343001141.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5512_RS01775Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCORC010000002.1Sequence record reported by the local genomic context database.
Genomic interval148 056-149 738 nt1 683 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span148 056-150 482 ntGCF_040921805::NZ_JBCORC010000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040921805::NZ_JBCORC010000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCORC010000002.1All displayed genes belong to this local TCS context.
Neighborhood span148 056-150 482 nt2 427 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
148 056 nt150 482 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5512_RS01775GCF_040921805#AB5512_RS01775
HKClassicCurrent focus
148 056-149 738 nt · Reverse (-)
AB5512_RS01780GCF_040921805#AB5512_RS01780
RROmpR
149 745-150 482 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039063605#ABCM64_RS00235Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1260457
Simplified PFAM architecture for HKOC_1260457
PFAM domain coverage: 229 / 560 aa (40.9%)
1 aa560 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[224-274] | HisKA[286-353] | HATPase_c[400-509]
- Domain count: 3
- Matched identifier: HKOC_1260457
- Positioned domains: HAMP 224-274 ; HisKA 286-353 ; HATPase_c 400-509
Cluster members and taxonomy
Representative gene: GCF_039063605#ABCM64_RS00235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_040921805
AssemblyASM4092180v1 · Scaffoldhaploid
Genome composition2 219 944 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 28 · HK 12 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key