1 Response_reg#1
3-103 aa · 101 aa · 43.2% of protein
Raw token
Response_reg:3:2.04e-24:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5513_RS06190
Response regulator NarL family
Bifidobacterium adolescentis · GCF_040921725
ClassRRTypeNarLLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040921725#AB5513_RS06190Stable P2CS identifier used across views.
GenomeGCF_040921725Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 234 aa (67.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
173-228 aa · 56 aa · 23.9% of protein
Raw token
HTH_LUXR:173:9.68e-21:228:56:58- Raw architecture: Response_reg:3:2.04e-24:103:101:111#HTH_LUXR:173:9.68e-21:228:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040921725::NZ_JBCORD010000024.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5896-7814Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040921725::NZ_JBCORD010000024.1::G00011Context members
AB5513_RS06185AB5513_RS06190
Partner locus tags
AB5513_RS06185AB5513_RS06190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021913833.1Primary protein accession used for annex mappings.
UniProt accessionA0A087DQB4Primary UniProt accession resolved in the annex database.
UniProt IDA0A087DQB4_BIFADDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5513_RS06190Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCORD010000024.1Sequence record reported by the local genomic context database.
Genomic interval7 110-7 814 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 896-7 814 ntGCF_040921725::NZ_JBCORD010000024.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040921725::NZ_JBCORD010000024.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCORD010000024.1All displayed genes belong to this local TCS context.
Neighborhood span5 896-7 814 nt1 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 896 nt7 814 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5513_RS06185GCF_040921725#AB5513_RS06185
HKClassic
5 896-7 110 nt · Forward (+)
AB5513_RS06190GCF_040921725#AB5513_RS06190
RRNarLCurrent focus
7 110-7 814 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000737885#BADO_RS05650Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049948
Simplified PFAM architecture for RROC_1049948
PFAM domain coverage: 155 / 234 aa (66.2%)
1 aa234 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[176-228]
- Domain count: 2
- Matched identifier: RROC_1049948
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 176-228 ; GerE 176-228
Cluster members and taxonomy
Representative gene: GCF_000737885#BADO_RS05650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_040921725
AssemblyASM4092172v1 · Scaffoldhaploid
Genome composition2 167 427 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key