1 Response_reg#1
3-124 aa · 122 aa · 45.0% of protein
Raw token
Response_reg:3:3.93e-20:124:124:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5513_RS03215
Response regulator LytTR family
Bifidobacterium adolescentis · GCF_040921725
ClassRRTypeLytTRLength271 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040921725#AB5513_RS03215Stable P2CS identifier used across views.
GenomeGCF_040921725Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length271 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 271 aa (72.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
176-249 aa · 74 aa · 27.3% of protein
Raw token
LytTR:176:0.00000111:249:79:98- Raw architecture: Response_reg:3:3.93e-20:124:124:111#LytTR:176:0.00000111:249:79:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040921725::NZ_JBCORD010000007.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span33270-34085Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040921725::NZ_JBCORD010000007.1::G00006Context members
AB5513_RS03215
Partner locus tags
AB5513_RS03215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003808178.1Primary protein accession used for annex mappings.
UniProt accessionA0A087DLZ2Primary UniProt accession resolved in the annex database.
UniProt IDA0A087DLZ2_BIFADDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5513_RS03215Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCORD010000007.1Sequence record reported by the local genomic context database.
Genomic interval33 270-34 085 nt816 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 270-34 085 ntGCF_040921725::NZ_JBCORD010000007.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040921725::NZ_JBCORD010000007.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCORD010000007.1All displayed genes belong to this local TCS context.
Neighborhood span33 270-34 085 nt816 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 270 nt34 085 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5513_RS03215GCF_040921725#AB5513_RS03215
RRLytTRCurrent focus
33 270-34 085 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154085#BIFADO_RS03530Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0611959
Simplified PFAM architecture for RROC_0611959
PFAM domain coverage: 203 / 271 aa (74.9%)
1 aa271 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-129] | LytTR[176-252]
- Domain count: 2
- Matched identifier: RROC_0611959
- Positioned domains: Response_reg 4-129 ; Response_reg 4-129 ; LytTR 176-252 ; LytTR 176-252
Cluster members and taxonomy
Representative gene: GCF_000154085#BIFADO_RS03530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_040921725
AssemblyASM4092172v1 · Scaffoldhaploid
Genome composition2 167 427 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key