1 HAMP#1
179-248 aa · 70 aa · 12.4% of protein
Raw token
HAMP:179:0.00000000000000378:248:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5489_RS04515
Histidine kinase, Classic
Bifidobacterium catenulatum · GCF_040921625
ClassHKTypeClassicLength564 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040921625#AB5489_RS04515Stable P2CS identifier used across views.
GenomeGCF_040921625Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length564 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 564 aa (51.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa564 aa
Domain-by-domain annotation3 items
2 HisKA#2
259-328 aa · 70 aa · 12.4% of protein
Raw token
HisKA:259:6.37e-16:328:70:643 HATPase_c#3
392-539 aa · 148 aa · 26.2% of protein
Raw token
HATPase_c:392:5.91e-20:539:148:109- Raw architecture: HAMP:179:0.00000000000000378:248:70:69#HisKA:259:6.37e-16:328:70:64#HATPase_c:392:5.91e-20:539:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040921625::NZ_JBCORK010000023.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3-1697Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040921625::NZ_JBCORK010000023.1::G00005Context members
AB5489_RS04515
Partner locus tags
AB5489_RS04515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_368103589.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5489_RS04515Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCORK010000023.1Sequence record reported by the local genomic context database.
Genomic interval3-1 697 nt1 695 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3-1 697 ntGCF_040921625::NZ_JBCORK010000023.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040921625::NZ_JBCORK010000023.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCORK010000023.1All displayed genes belong to this local TCS context.
Neighborhood span3-1 697 nt1 695 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 nt1 697 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5489_RS04515GCF_040921625#AB5489_RS04515
HKClassicCurrent focus
3-1 697 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040921625#AB5489_RS04515The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1243810
Simplified PFAM architecture for HKOC_1243810
PFAM domain coverage: 268 / 564 aa (47.5%)
1 aa564 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[197-248] | HisKA[260-328] | HATPase_c[392-538]
- Domain count: 3
- Matched identifier: HKOC_1243810
- Positioned domains: HAMP 197-248 ; HisKA 260-328 ; HATPase_c 392-538
Cluster members and taxonomy
Representative gene: GCF_040921625#AB5489_RS04515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_040921625
AssemblyASM4092162v1 · Scaffoldhaploid
Genome composition2 084 016 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 27 · HK 12 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key