1 HAMP#1
158-227 aa · 70 aa · 15.2% of protein
Raw token
HAMP:158:0.00000332:227:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5464_RS06680
Histidine kinase, Classic
Bifidobacterium catenulatum · GCF_040921565
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040921565#AB5464_RS06680Stable P2CS identifier used across views.
GenomeGCF_040921565Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 462 aa (53.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation3 items
2 HisKA#2
239-306 aa · 68 aa · 14.7% of protein
Raw token
HisKA:239:0.00000000433:306:68:643 HATPase_c#3
353-462 aa · 110 aa · 23.8% of protein
Raw token
HATPase_c:353:1.3e-22:462:111:109- Raw architecture: HAMP:158:0.00000332:227:70:69#HisKA:239:0.00000000433:306:68:64#HATPase_c:353:1.3e-22:462:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040921565::NZ_JBCORM010000010.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39415-41492Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040921565::NZ_JBCORM010000010.1::G00006Context members
AB5464_RS06680AB5464_RS06685
Partner locus tags
AB5464_RS06680AB5464_RS06685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271728011.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5464_RS06680Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCORM010000010.1Sequence record reported by the local genomic context database.
Genomic interval39 415-40 803 nt1 389 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 415-41 492 ntGCF_040921565::NZ_JBCORM010000010.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040921565::NZ_JBCORM010000010.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCORM010000010.1All displayed genes belong to this local TCS context.
Neighborhood span39 415-41 492 nt2 078 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 415 nt41 492 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5464_RS06680GCF_040921565#AB5464_RS06680
HKClassicCurrent focus
39 415-40 803 nt · Reverse (-)
AB5464_RS06685GCF_040921565#AB5464_RS06685
RROmpR
40 830-41 492 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028316405#PMS68_RS06800Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1815150
Simplified PFAM architecture for HKOC_1815150
PFAM domain coverage: 175 / 462 aa (37.9%)
1 aa462 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[239-303] | HATPase_c[353-462]
- Domain count: 2
- Matched identifier: HKOC_1815150
- Positioned domains: HisKA 239-303 ; HATPase_c 353-462
Cluster members and taxonomy
Representative gene: GCF_028316405#PMS68_RS06800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_040921565
AssemblyASM4092156v1 · Scaffoldhaploid
Genome composition2 039 479 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key