1 Response_reg#1
13-126 aa · 114 aa · 52.3% of protein
Raw token
Response_reg:13:6.8e-16:126:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5455_RS09160
Response regulator NarL family
Bifidobacterium catenulatum · GCF_040921545
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040921545#AB5455_RS09160Stable P2CS identifier used across views.
GenomeGCF_040921545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 218 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-211 aa · 57 aa · 26.1% of protein
Raw token
HTH_LUXR:155:9.33e-19:211:57:58- Raw architecture: Response_reg:13:6.8e-16:126:115:111#HTH_LUXR:155:9.33e-19:211:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040921545::NZ_JBCORO010000040.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span256-912Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040921545::NZ_JBCORO010000040.1::G00012Context members
AB5455_RS09160
Partner locus tags
AB5455_RS09160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_302288493.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5455_RS09160Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCORO010000040.1Sequence record reported by the local genomic context database.
Genomic interval256-912 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span256-912 ntGCF_040921545::NZ_JBCORO010000040.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040921545::NZ_JBCORO010000040.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCORO010000040.1All displayed genes belong to this local TCS context.
Neighborhood span256-912 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
256 nt912 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5455_RS09160GCF_040921545#AB5455_RS09160
RRNarLCurrent focus
256-912 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040921505#AB5462_RS03035Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0701758
Simplified PFAM architecture for RROC_0701758
PFAM domain coverage: 167 / 253 aa (66.0%)
1 aa253 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[48-160] | GerE[192-245]
- Domain count: 2
- Matched identifier: RROC_0701758
- Positioned domains: Response_reg 48-160 ; GerE 192-245
Cluster members and taxonomy
Representative gene: GCF_040921505#AB5462_RS03035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_040921545
AssemblyASM4092154v1 · Scaffoldhaploid
Genome composition2 116 054 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 22 · HK 10 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key