1 Response_reg#1
15-122 aa · 108 aa · 44.6% of protein
Raw token
Response_reg:15:1.36e-36:122:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5312_RS00345
Response regulator OmpR family
Bifidobacterium catenulatum · GCF_040917305
ClassRRTypeOmpRLength242 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040917305#AB5312_RS00345Stable P2CS identifier used across views.
GenomeGCF_040917305Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 242 aa (74.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-235 aa · 72 aa · 29.8% of protein
Raw token
Trans_reg_C:164:3.78e-29:235:77:77- Raw architecture: Response_reg:15:1.36e-36:122:109:111#Trans_reg_C:164:3.78e-29:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040917305::NZ_JBCOZZ010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span85428-87267Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040917305::NZ_JBCOZZ010000001.1::G00002Context members
AB5312_RS00345AB5312_RS00350
Partner locus tags
AB5312_RS00345AB5312_RS00350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003835236.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5ZWF8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5ZWF8_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5312_RS00345Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOZZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval85 428-86 156 nt729 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span85 428-87 267 ntGCF_040917305::NZ_JBCOZZ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040917305::NZ_JBCOZZ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOZZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span85 428-87 267 nt1 840 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 428 nt87 267 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5312_RS00345GCF_040917305#AB5312_RS00345
RROmpRCurrent focus
85 428-86 156 nt · Forward (+)
AB5312_RS00350GCF_040917305#AB5312_RS00350
HKClassic
86 191-87 267 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173455#BIFCAT_RS04470Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0843733
Simplified PFAM architecture for RROC_0843733
PFAM domain coverage: 180 / 242 aa (74.4%)
1 aa242 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-122] | Trans_reg_C[164-235]
- Domain count: 2
- Matched identifier: RROC_0843733
- Positioned domains: Response_reg 15-122 ; Response_reg 15-122 ; Trans_reg_C 164-235 ; Trans_reg_C 164-235
Cluster members and taxonomy
Representative gene: GCF_000173455#BIFCAT_RS04470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_040917305
AssemblyASM4091730v1 · Scaffoldhaploid
Genome composition2 210 677 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key