1 Response_reg#1
15-122 aa · 108 aa · 44.6% of protein
Raw token
Response_reg:15:1.36e-36:122:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5316_RS01490
Response regulator OmpR family
Bifidobacterium catenulatum · GCF_040917285
ClassRRTypeOmpRLength242 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040917285#AB5316_RS01490Stable P2CS identifier used across views.
GenomeGCF_040917285Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 242 aa (74.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-235 aa · 72 aa · 29.8% of protein
Raw token
Trans_reg_C:164:3.78e-29:235:77:77- Raw architecture: Response_reg:15:1.36e-36:122:109:111#Trans_reg_C:164:3.78e-29:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040917285::NZ_JBCOZY010000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span148769-150608Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040917285::NZ_JBCOZY010000002.1::G00004Context members
AB5316_RS01485AB5316_RS01490
Partner locus tags
AB5316_RS01485AB5316_RS01490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003835236.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5ZWF8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5ZWF8_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5316_RS01490Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCOZY010000002.1Sequence record reported by the local genomic context database.
Genomic interval149 880-150 608 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span148 769-150 608 ntGCF_040917285::NZ_JBCOZY010000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040917285::NZ_JBCOZY010000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCOZY010000002.1All displayed genes belong to this local TCS context.
Neighborhood span148 769-150 608 nt1 840 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
148 769 nt150 608 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5316_RS01485GCF_040917285#AB5316_RS01485
HKClassic
148 769-149 845 nt · Reverse (-)
AB5316_RS01490GCF_040917285#AB5316_RS01490
RROmpRCurrent focus
149 880-150 608 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173455#BIFCAT_RS04470Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0843733
Simplified PFAM architecture for RROC_0843733
PFAM domain coverage: 180 / 242 aa (74.4%)
1 aa242 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-122] | Trans_reg_C[164-235]
- Domain count: 2
- Matched identifier: RROC_0843733
- Positioned domains: Response_reg 15-122 ; Response_reg 15-122 ; Trans_reg_C 164-235 ; Trans_reg_C 164-235
Cluster members and taxonomy
Representative gene: GCF_000173455#BIFCAT_RS04470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_040917285
AssemblyASM4091728v1 · Scaffoldhaploid
Genome composition2 015 203 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key