1 Response_reg#1
15-122 aa · 108 aa · 45.0% of protein
Raw token
Response_reg:15:3.61e-36:122:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5287_RS03695
Response regulator OmpR family
Bifidobacterium sp. RTP21102st3_E2_RTP21102_210122 · GCF_040916945
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040916945#AB5287_RS03695Stable P2CS identifier used across views.
GenomeGCF_040916945Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 240 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-235 aa · 72 aa · 30.0% of protein
Raw token
Trans_reg_C:164:1.73e-30:235:77:77- Raw architecture: Response_reg:15:3.61e-36:122:109:111#Trans_reg_C:164:1.73e-30:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040916945::NZ_JBCPAN010000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span397429-399224Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040916945::NZ_JBCPAN010000002.1::G00005Context members
AB5287_RS03690AB5287_RS03695
Partner locus tags
AB5287_RS03690AB5287_RS03695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007051909.1Primary protein accession used for annex mappings.
UniProt accessionD6ZTH4Primary UniProt accession resolved in the annex database.
UniProt IDD6ZTH4_BIFLJDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5287_RS03695Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCPAN010000002.1Sequence record reported by the local genomic context database.
Genomic interval398 502-399 224 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span397 429-399 224 ntGCF_040916945::NZ_JBCPAN010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040916945::NZ_JBCPAN010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCPAN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span397 429-399 224 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
397 429 nt399 224 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5287_RS03690GCF_040916945#AB5287_RS03690
HKClassic
397 429-398 502 nt · Reverse (-)
AB5287_RS03695GCF_040916945#AB5287_RS03695
RROmpRCurrent focus
398 502-399 224 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS08255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0881917
Simplified PFAM architecture for RROC_0881917
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-122] | Trans_reg_C[164-235]
- Domain count: 2
- Matched identifier: RROC_0881917
- Positioned domains: Response_reg 15-122 ; Response_reg 15-122 ; Trans_reg_C 164-235 ; Trans_reg_C 164-235
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS08255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 143 206 · GCF_040916945
AssemblyASM4091694v1 · Scaffoldhaploid
Genome composition2 324 825 bp · 59,5% GCBifidobacterium sp. RTP21102st3_E2_RTP21102_210122
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key