1 Response_reg#1
9-119 aa · 111 aa · 45.7% of protein
Raw token
Response_reg:9:7.86e-37:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5287_RS01385
Response regulator OmpR family
Bifidobacterium sp. RTP21102st3_E2_RTP21102_210122 · GCF_040916945
ClassRRTypeOmpRLength243 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040916945#AB5287_RS01385Stable P2CS identifier used across views.
GenomeGCF_040916945Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 243 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-238 aa · 86 aa · 35.4% of protein
Raw token
Trans_reg_C:153:3.21e-29:238:86:77- Raw architecture: Response_reg:9:7.86e-37:119:111:111#Trans_reg_C:153:3.21e-29:238:86:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040916945::NZ_JBCPAN010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span306213-308965Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040916945::NZ_JBCPAN010000001.1::G00002Context members
AB5287_RS01385AB5287_RS01390
Partner locus tags
AB5287_RS01385AB5287_RS01390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_156625269.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5287_RS01385Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCPAN010000001.1Sequence record reported by the local genomic context database.
Genomic interval306 213-306 944 nt732 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span306 213-308 965 ntGCF_040916945::NZ_JBCPAN010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040916945::NZ_JBCPAN010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCPAN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span306 213-308 965 nt2 753 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
306 213 nt308 965 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5287_RS01385GCF_040916945#AB5287_RS01385
RROmpRCurrent focus
306 213-306 944 nt · Forward (+)
AB5287_RS01390GCF_040916945#AB5287_RS01390
HKClassic
306 974-308 965 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009738515#GN236_RS07105Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0831251
Simplified PFAM architecture for RROC_0831251
PFAM domain coverage: 196 / 243 aa (80.7%)
1 aa243 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-119] | Trans_reg_C[153-237]
- Domain count: 2
- Matched identifier: RROC_0831251
- Positioned domains: Response_reg 9-119 ; Response_reg 9-119 ; Trans_reg_C 153-237 ; Trans_reg_C 153-237
Cluster members and taxonomy
Representative gene: GCF_009738515#GN236_RS07105
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 7 over 7 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 143 206 · GCF_040916945
AssemblyASM4091694v1 · Scaffoldhaploid
Genome composition2 324 825 bp · 59,5% GCBifidobacterium sp. RTP21102st3_E2_RTP21102_210122
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key