1 H_kinase_N#1
10-145 aa · 136 aa · 27.5% of protein
Raw token
H_kinase_N:10:1.22e-47:145:137:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5254_RS04320
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_040916525
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040916525#AB5254_RS04320Stable P2CS identifier used across views.
GenomeGCF_040916525Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage413 / 495 aa (83.4%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation4 items
2 PAS_4#2
175-278 aa · 104 aa · 21.0% of protein
Raw token
PAS_4:175:0.00000000434:278:109:1103 HisKA_2#3
292-361 aa · 70 aa · 14.1% of protein
Raw token
HisKA_2:292:1.75e-29:361:71:764 HATPase_c#4
388-490 aa · 103 aa · 20.8% of protein
Raw token
HATPase_c:388:9.12e-17:490:112:109- Raw architecture: H_kinase_N:10:1.22e-47:145:137:139#PAS_4:175:0.00000000434:278:109:110#HisKA_2:292:1.75e-29:361:71:76#HATPase_c:388:9.12e-17:490:112:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040916525::NZ_JBCPBK010000013.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span27187-28674Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040916525::NZ_JBCPBK010000013.1::G00005Context members
AB5254_RS04320
Partner locus tags
AB5254_RS04320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033523997.1Primary protein accession used for annex mappings.
UniProt accessionA0A173YBV5Primary UniProt accession resolved in the annex database.
UniProt IDA0A173YBV5_BIFPSDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5254_RS04320Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCPBK010000013.1Sequence record reported by the local genomic context database.
Genomic interval27 187-28 674 nt1 488 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 187-28 674 ntGCF_040916525::NZ_JBCPBK010000013.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040916525::NZ_JBCPBK010000013.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCPBK010000013.1All displayed genes belong to this local TCS context.
Neighborhood span27 187-28 674 nt1 488 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 187 nt28 674 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5254_RS04320GCF_040916525#AB5254_RS04320
HKClassicCurrent focus
27 187-28 674 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173435#BIFPSEUDO_RS05020Use this link to inspect the representative gene detail.
PFAM architectureGAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504314
Simplified PFAM architecture for HKOC_1504314
PFAM domain coverage: 416 / 495 aa (84.0%)
1 aa495 aa
GAF_PdtaSPAS_4HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[5-141] | PAS_4[174-278] | HisKA_2[292-363] | HATPase_c[388-489]
- Domain count: 4
- Matched identifier: HKOC_1504314
- Positioned domains: GAF_PdtaS 5-141 ; PAS_4 174-278 ; HisKA_2 292-363 ; HATPase_c 388-489
Cluster members and taxonomy
Representative gene: GCF_000173435#BIFPSEUDO_RS05020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_040916525
AssemblyASM4091652v1 · Scaffoldhaploid
Genome composition2 367 000 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 25 · HK 10 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key