1 HisKA#1
127-188 aa · 62 aa · 18.0% of protein
Raw token
HisKA:127:0.00000000692:188:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5271_RS14520
Histidine kinase, Classic
Blautia wexlerae · GCF_040916065
ClassHKTypeClassicLength345 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040916065#AB5271_RS14520Stable P2CS identifier used across views.
GenomeGCF_040916065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length345 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 345 aa (48.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa345 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
234-337 aa · 104 aa · 30.1% of protein
Raw token
HATPase_c:234:2.16e-30:337:104:109- Raw architecture: HisKA:127:0.00000000692:188:62:64#HATPase_c:234:2.16e-30:337:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040916065::NZ_JBCPCI010000050.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22372-24104Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040916065::NZ_JBCPCI010000050.1::G00052Context members
AB5271_RS14515AB5271_RS14520
Partner locus tags
AB5271_RS14515AB5271_RS14520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118566995.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8T8N3Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8T8N3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5271_RS14520Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCPCI010000050.1Sequence record reported by the local genomic context database.
Genomic interval23 067-24 104 nt1 038 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 372-24 104 ntGCF_040916065::NZ_JBCPCI010000050.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040916065::NZ_JBCPCI010000050.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCPCI010000050.1All displayed genes belong to this local TCS context.
Neighborhood span22 372-24 104 nt1 733 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 372 nt24 104 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5271_RS14515GCF_040916065#AB5271_RS14515
RROmpR
22 372-23 058 nt · Forward (+)
AB5271_RS14520GCF_040916065#AB5271_RS14520
HKClassicCurrent focus
23 067-24 104 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009876865#GT728_RS16545Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2820348
Simplified PFAM architecture for HKOC_2820348
PFAM domain coverage: 170 / 345 aa (49.3%)
1 aa345 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[125-188] | HATPase_c[234-339]
- Domain count: 2
- Matched identifier: HKOC_2820348
- Positioned domains: HisKA 125-188 ; HATPase_c 234-339
Cluster members and taxonomy
Representative gene: GCF_009876865#GT728_RS16545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040916065
AssemblyASM4091606v1 · Scaffoldhaploid
Genome composition3 947 185 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 116 · HK 58 · RR 56CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key