1 GAF#1
53-167 aa · 115 aa · 13.0% of protein
Raw token
GAF:53:0.00000277:167:115:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5271_RS14220
Histidine kinase, Hybrid
Blautia wexlerae · GCF_040916065
ClassHKTypeHybridLength887 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040916065#AB5271_RS14220Stable P2CS identifier used across views.
GenomeGCF_040916065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GAFHisKAHATPase_cResponse_reg
Protein length887 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage418 / 887 aa (47.1%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa887 aa
Domain-by-domain annotation4 items
2 HisKA#2
512-578 aa · 67 aa · 7.6% of protein
Raw token
HisKA:512:0.000000000000146:578:67:643 HATPase_c#3
625-742 aa · 118 aa · 13.3% of protein
Raw token
HATPase_c:625:1.67e-25:742:118:1094 Response_reg#4
764-881 aa · 118 aa · 13.3% of protein
Raw token
Response_reg:764:9.06e-28:881:118:111- Raw architecture: GAF:53:0.00000277:167:115:133#HisKA:512:0.000000000000146:578:67:64#HATPase_c:625:1.67e-25:742:118:109#Response_reg:764:9.06e-28:881:118:111
- Domain description: 1 GAF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040916065::NZ_JBCPCI010000048.1::G00051
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span16419-21179Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040916065::NZ_JBCPCI010000048.1::G00051Context members
AB5271_RS14215AB5271_RS14220
Partner locus tags
AB5271_RS14215AB5271_RS14220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008704206.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8XU28Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8XU28_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5271_RS14220Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCPCI010000048.1Sequence record reported by the local genomic context database.
Genomic interval18 516-21 179 nt2 664 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 419-21 179 ntGCF_040916065::NZ_JBCPCI010000048.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040916065::NZ_JBCPCI010000048.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCPCI010000048.1All displayed genes belong to this local TCS context.
Neighborhood span16 419-21 179 nt4 761 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 419 nt21 179 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5271_RS14215GCF_040916065#AB5271_RS14215
HKHybrid
16 419-18 479 nt · Reverse (-)
AB5271_RS14220GCF_040916065#AB5271_RS14220
HKHybridCurrent focus
18 516-21 179 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009881235#GT685_RS04130Use this link to inspect the representative gene detail.
PFAM architectureGAF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0433266
Simplified PFAM architecture for HKOC_0433266
PFAM domain coverage: 415 / 887 aa (46.8%)
1 aa887 aa
GAFHisKAHATPase_cResponse_reg
- Simplified architecture: GAF + HisKA + HATPase_c + Response_reg
- Raw architecture: GAF[51-166] | HisKA[512-578] | HATPase_c[626-740] | Response_reg[764-880]
- Domain count: 4
- Matched identifier: HKOC_0433266
- Positioned domains: GAF 51-166 ; HisKA 512-578 ; HATPase_c 626-740 ; Response_reg 764-880
Cluster members and taxonomy
Representative gene: GCF_009881235#GT685_RS04130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040916065
AssemblyASM4091606v1 · Scaffoldhaploid
Genome composition3 947 185 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 116 · HK 58 · RR 56CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key