1 HisKA#1
262-327 aa · 66 aa · 10.3% of protein
Raw token
HisKA:262:0.0000000000000021:327:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5271_RS13530
Histidine kinase, Hybrid
Blautia wexlerae · GCF_040916065
ClassHKTypeHybridLength640 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_040916065#AB5271_RS13530Stable P2CS identifier used across views.
GenomeGCF_040916065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length640 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage304 / 640 aa (47.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa640 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
374-492 aa · 119 aa · 18.6% of protein
Raw token
HATPase_c:374:1.38e-29:492:119:1093 Response_reg#3
515-633 aa · 119 aa · 18.6% of protein
Raw token
Response_reg:515:3.41e-30:633:119:111- Raw architecture: HisKA:262:0.0000000000000021:327:66:64#HATPase_c:374:1.38e-29:492:119:109#Response_reg:515:3.41e-30:633:119:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_040916065::NZ_JBCPCI010000043.1::G00045
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1847-3769Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040916065::NZ_JBCPCI010000043.1::G00045Context members
AB5271_RS13530
Partner locus tags
AB5271_RS13530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270401581.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5271_RS13530Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCPCI010000043.1Sequence record reported by the local genomic context database.
Genomic interval1 847-3 769 nt1 923 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 847-3 769 ntGCF_040916065::NZ_JBCPCI010000043.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040916065::NZ_JBCPCI010000043.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCPCI010000043.1All displayed genes belong to this local TCS context.
Neighborhood span1 847-3 769 nt1 923 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 847 nt3 769 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AB5271_RS13530GCF_040916065#AB5271_RS13530
HKHybridCurrent focus
1 847-3 769 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027660665#PGP71_RS17540Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0922662
Simplified PFAM architecture for HKOC_0922662
PFAM domain coverage: 303 / 640 aa (47.3%)
1 aa640 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[262-327] | HATPase_c[375-492] | Response_reg[515-633]
- Domain count: 3
- Matched identifier: HKOC_0922662
- Positioned domains: HisKA 262-327 ; HATPase_c 375-492 ; Response_reg 515-633
Cluster members and taxonomy
Representative gene: GCF_027660665#PGP71_RS17540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040916065
AssemblyASM4091606v1 · Scaffoldhaploid
Genome composition3 947 185 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 116 · HK 58 · RR 56CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key