1 PBPb#1
47-264 aa · 218 aa · 22.8% of protein
Raw token
PBPb:47:5.51e-33:264:229:219P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AB5271_RS12790
Histidine kinase, Hybrid
Blautia wexlerae · GCF_040916065
ClassHKTypeHybridLength956 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_040916065#AB5271_RS12790Stable P2CS identifier used across views.
GenomeGCF_040916065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PBPbHisKAHATPase_cResponse_reg
Protein length956 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage724 / 956 aa (75.7%)Merged over positioned domains only.
Domain description2 PBPb,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa956 aa
Domain-by-domain annotation5 items
2 PBPb#2
286-490 aa · 205 aa · 21.4% of protein
Raw token
PBPb:286:0.00000000000000625:490:215:2193 HisKA#3
575-640 aa · 66 aa · 6.9% of protein
Raw token
HisKA:575:6.37e-18:640:66:644 HATPase_c#4
687-804 aa · 118 aa · 12.3% of protein
Raw token
HATPase_c:687:1.29e-31:804:119:1095 Response_reg#5
830-946 aa · 117 aa · 12.2% of protein
Raw token
Response_reg:830:8.64e-30:946:117:111- Raw architecture: PBPb:47:5.51e-33:264:229:219#PBPb:286:0.00000000000000625:490:215:219#HisKA:575:6.37e-18:640:66:64#HATPase_c:687:1.29e-31:804:119:109#Response_reg:830:8.64e-30:946:117:111
- Domain description: 2 PBPb,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_040916065::NZ_JBCPCI010000038.1::G00041
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span30259-36005Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_040916065::NZ_JBCPCI010000038.1::G00041Context members
AB5271_RS12790AB5271_RS12795
Partner locus tags
AB5271_RS12790AB5271_RS12795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226840073.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAB5271_RS12790Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBCPCI010000038.1Sequence record reported by the local genomic context database.
Genomic interval30 259-33 129 nt2 871 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 259-36 005 ntGCF_040916065::NZ_JBCPCI010000038.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_040916065::NZ_JBCPCI010000038.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBCPCI010000038.1All displayed genes belong to this local TCS context.
Neighborhood span30 259-36 005 nt5 747 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 259 nt36 005 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AB5271_RS12790GCF_040916065#AB5271_RS12790
HKHybridCurrent focus
30 259-33 129 nt · Reverse (-)
AB5271_RS12795GCF_040916065#AB5271_RS12795
HKHybrid
33 234-36 005 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302085#G5A06_RS11060Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0321306
Simplified PFAM architecture for HKOC_0321306
PFAM domain coverage: 508 / 956 aa (53.1%)
1 aa956 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[55-264] | HisKA[575-640] | HATPase_c[687-802] | Response_reg[830-945]
- Domain count: 4
- Matched identifier: HKOC_0321306
- Positioned domains: SBP_bac_3 55-264 ; HisKA 575-640 ; HATPase_c 687-802 ; Response_reg 830-945
Cluster members and taxonomy
Representative gene: GCF_013302085#G5A06_RS11060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_040916065
AssemblyASM4091606v1 · Scaffoldhaploid
Genome composition3 947 185 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 116 · HK 58 · RR 56CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key